1700009J07Rik Gene Detail

Summary

• Symbol
  1700009J07Rik
• Name
  RIKEN cDNA 1700009J07 gene
• Synonyms
  4930535B06Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1914938
  NCBI Gene: 75188
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:77729254-77731945 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM, cytoband C1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914938	lncRNA gene	Chr10:77729208-77731954 (+)
129S1/SvImJ	ENSMUSG00200050126	lncRNA gene	Chr10:74407220-74409917 (+)
A/J	ENSMUSG00195051152	lncRNA gene	Chr10:74743948-74746645 (+)
AKR/J	ENSMUSG00220050154	lncRNA gene	Chr10:74403536-74406233 (+)
BALB/cJ	ENSMUSG00180052897	lncRNA gene	Chr10:74758326-74761023 (+)
C3H/HeJ	ENSMUSG00175052648	lncRNA gene	Chr10:74629473-74632170 (+)
C57BL/6NJ	ENSMUSG00215052847	lncRNA gene	Chr10:74367225-74369922 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004652	lincRNA gene	Chr10:71937911-71940637 (+)
CAST/EiJ	ENSTCUG00005051876	lncRNA gene	Chr10:74256311-74258984 (+)
CBA/J	ENSMUSG00210050077	lncRNA gene	Chr10:74485632-74488329 (+)
DBA/2J	ENSMUSG00185053975	lncRNA gene	Chr10:74827959-74830656 (+)
FVB/NJ	ENSMUSG00205050913	lncRNA gene	Chr10:74519974-74522671 (+)
JF1/MsJ	ENSUMUG00000055588	lncRNA gene	Chr10:75989413-75992102 (+)
LP/J	ENSMUSG00230051214	lncRNA gene	Chr10:76597452-76600149 (+)
NOD/ShiLtJ	ENSMUSG00190052957	lncRNA gene	Chr10:74805426-74808123 (+)
NZO/HlLtJ	ENSMUSG00225048203	lncRNA gene	Chr10:80891707-80894420 (+)
PWK/PhJ	ENSLUMG00010051350	lncRNA gene	Chr10:74382047-74384736 (+)
SPRET/EiJ	ENSMSPG00010048259	lncRNA gene	Chr10:76165082-76167800 (+)
WSB/EiJ	ENSIUOG00005051823	lncRNA gene	Chr10:74412753-74415466 (+)

Homology

• Gene Tree
  1700009J07Rik
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  34 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Endonuclease-mediated
  2
• Targeted
  3
• Genomic Mutations
  5 involving 1700009J07Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  10
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096573 (Evidence)
• NCBI Gene
  75188

Representative Sequences			Length	Strain/Species
genomic	75188	NCBI Gene Model | MGI Sequence Detail	2692	C57BL/6J
transcript	NR_015547	RefSeq | MGI Sequence Detail	914	C57BL/6
polypeptide	Q9D4Z3	UniProt | EBI | MGI Sequence Detail	125	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1922438

References

• Summaries
  All 50

  Developmental Gene Expression 1

  Diseases 2

  Phenotypes 34
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:374041 Verma A, et al., Parental noncoding RNA expression dynamics across sperm, oocyte, and zygote. NAR Genom Bioinform. 2025 Dec;7(4):lqaf136

TSS for 1700009J07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94300	Chr10:77728890-77728923 (+)	-347 bp
Tssr94301	Chr10:77729247-77729265 (+)	2 bp
Tssr94302	Chr10:77729269-77729276 (+)	19 bp