0610040B10Rik Gene Detail

Summary

• Symbol
  0610040B10Rik
• Name
  RIKEN cDNA 0610040B10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914922
  NCBI Gene: 67672
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:143315063-143318459 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 82.08 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  277 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914922	lncRNA gene	Chr5:143314828-143318463 (+)
129S1/SvImJ	ENSMUSG00200041773	lncRNA gene	Chr5:137183183-137186640 (+)
A/J	ENSMUSG00195046663	lncRNA gene	Chr5:136827635-136831092 (+)
AKR/J	ENSMUSG00220023080	lncRNA gene	Chr5:136060608-136064065 (+)
BALB/cJ	ENSMUSG00180036107	lncRNA gene	Chr5:136929674-136933131 (+)
C3H/HeJ	ENSMUSG00175050085	lncRNA gene	Chr5:138855189-138858646 (+)
C57BL/6NJ	ENSMUSG00215040847	lncRNA gene	Chr5:136763802-136767259 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003803	antisense lncRNA gene	Chr5:136055049-136058447 (+)
CAST/EiJ	ENSTCUG00005035705	lncRNA gene	Chr5:136210664-136214128 (+)
CBA/J	ENSMUSG00210024614	lncRNA gene	Chr5:137662033-137665490 (+)
DBA/2J	ENSMUSG00185055069	lncRNA gene	Chr5:140656879-140660336 (+)
FVB/NJ	ENSMUSG00205042637	lncRNA gene	Chr5:136481350-136484807 (+)
JF1/MsJ	ENSUMUG00000051841	lncRNA gene	Chr5:143538755-143542409 (+)
LP/J	ENSMUSG00230030334	lncRNA gene	Chr5:144786929-144790386 (+)
NOD/ShiLtJ	ENSMUSG00190047783	lncRNA gene	Chr5:136620148-136623605 (+)
NZO/HlLtJ	ENSMUSG00225024058	lncRNA gene	Chr5:152254410-152257867 (+)
PWK/PhJ	ENSLUMG00010020627	lncRNA gene	Chr5:135244705-135248363 (+)
SPRET/EiJ	ENSMSPG00010040444	lncRNA gene	Chr5:138854201-138857865 (+)
WSB/EiJ	ENSIUOG00005040154	lncRNA gene	Chr5:139145489-139148946 (+)

Homology

• Gene Tree
  0610040B10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  18
• Gene trapped
  18
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  12

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000089889 (Evidence)
• NCBI Gene
  67672

Representative Sequences			Length	Strain/Species
genomic	67672	NCBI Gene Model | MGI Sequence Detail	3397	C57BL/6J
transcript	NR_027874	RefSeq | MGI Sequence Detail	443	C57BL/6
polypeptide	Q3UN32	UniProt | EBI | MGI Sequence Detail	50	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 12

  cDNA 12

  
  

  Microarray probesets 3

References

• Summaries
  All 20

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 0610040B10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49643	Chr5:143315048-143315077 (+)	0 bp