4930563I02Rik Gene Detail

Summary

• Symbol
  4930563I02Rik
• Name
  RIKEN cDNA 4930563I02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914909
  NCBI Gene: 67659
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:60324955-60333536 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 31.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  232 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914909	lncRNA gene	Chr14:60324468-60333542 (+)
129S1/SvImJ	ENSMUSG00200044874	lncRNA gene	Chr14:48910093-48919117 (+)
A/J	ENSMUSG00195037555	lncRNA gene	Chr14:49115825-49124849 (+)
AKR/J	ENSMUSG00220036192	lncRNA gene	Chr14:48465060-48474083 (+)
BALB/cJ	ENSMUSG00180053330	lncRNA gene	Chr14:48739755-48748779 (+)
C3H/HeJ	ENSMUSG00175052270	lncRNA gene	Chr14:50458180-50467203 (+)
C57BL/6NJ	ENSMUSG00215051042	lncRNA gene	Chr14:48649613-48658636 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019372	protein coding gene	Chr14:51297114-51305610 (+)
CAST/EiJ	ENSTCUG00005051050	lncRNA gene	Chr14:50416733-50425804 (+)
CBA/J	ENSMUSG00210048946	lncRNA gene	Chr14:49106016-49115039 (+)
DBA/2J	ENSMUSG00185033033	lncRNA gene	Chr14:54256336-54265358 (+)
FVB/NJ	ENSMUSG00205046744	lncRNA gene	Chr14:48553272-48562295 (+)
JF1/MsJ	ENSUMUG00000049329	lncRNA gene	Chr14:65480200-65489241 (+)
LP/J	ENSMUSG00230037259	lncRNA gene	Chr14:66280521-66289543 (+)
NOD/ShiLtJ	ENSMUSG00190051589	lncRNA gene	Chr14:48883503-48892525 (+)
NZO/HlLtJ	ENSMUSG00225047426	lncRNA gene	Chr14:56625026-56634048 (+)
PWK/PhJ	ENSLUMG00010050490	lncRNA gene	Chr14:48336256-48345278 (+)
SPRET/EiJ	ENSMSPG00010036118	lncRNA gene	Chr14:51793416-51802425 (+)
WSB/EiJ	ENSIUOG00005046852	lncRNA gene	Chr14:48314507-48323531 (+)

Homology

• Gene Tree
  4930563I02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 4930563I02Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  63
• RefSeq
  3

• Ensembl
  ENSMUSG00000086112 (Evidence)
• NCBI Gene
  67659

Representative Sequences			Length	Strain/Species
genomic	67659	NCBI Gene Model | MGI Sequence Detail	8582	C57BL/6J
transcript	NR_166718	RefSeq | MGI Sequence Detail	1085	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 4930563I02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125918	Chr14:60324951-60324963 (+)	2 bp
Tssr125919	Chr14:60324978-60324995 (+)	32 bp