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Ctxnd2 Gene Detail
Summary
  • Symbol
    Ctxnd2
  • Name
    cortexin domain containing 2
  • Synonyms
    4930558C23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914904
    NCBI Gene: 67654
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:95293769-95310143 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.74 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    90 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914904
 protein coding gene Chr3:95293769-95310152 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006243
 lincRNA gene Chr3:96116679-96124984 (-)
A/J MGP_AJ_G0006235
 lincRNA gene Chr3:93134207-93145562 (-)
AKR/J MGP_AKRJ_G0006211
 lincRNA gene Chr3:95293040-95304142 (-)
BALB/cJ MGP_BALBcJ_G0006211
 lincRNA gene Chr3:92905071-92917679 (-)
C3H/HeJ MGP_C3HHeJ_G0006161
 lincRNA gene Chr3:95568111-95584025 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006375
 lincRNA gene Chr3:99672701-99688669 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005678
 lincRNA gene Chr3:89489901-89501018 (-)
CAST/EiJ MGP_CASTEiJ_G0006095
 lincRNA gene Chr3:94854469-94866735 (-)
CBA/J MGP_CBAJ_G0006146
 lincRNA gene Chr3:103309378-103325546 (-)
DBA/2J MGP_DBA2J_G0006165
 lincRNA gene Chr3:92423252-92435255 (-)
FVB/NJ MGP_FVBNJ_G0006188
 lincRNA gene Chr3:90499818-90516442 (-)
LP/J MGP_LPJ_G0006247
 lincRNA gene Chr3:97428503-97436975 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006179
 lincRNA gene Chr3:109408280-109420285 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006379
 lincRNA gene Chr3:94942732-94957444 (-)
PWK/PhJ MGP_PWKPhJ_G0006039
 lincRNA gene Chr3:92302903-92314258 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005947
 lincRNA gene Chr3:93230110-93241085 (-)
WSB/EiJ MGP_WSBEiJ_G0006142
 lincRNA gene Chr3:95324949-95335826 (-)



Homology
more
  • Human Ortholog
    CTXND2, cortexin domain containing 2
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CTXND2, cortexin domain containing 2
  • Links
    NCBI Gene ID: 100996521
    UniProt: A0A1B0GV90

  • Chr Location
    chr1:150887136-150913292 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    3
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Ctxnd2
  • Find Mice (IMSR)
    17 strains or lines available
Males homozygous for a null allele show normal male fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 67654 NCBI Gene Model | MGI Sequence Detail 16375 C57BL/6J ±  kb
transcript NM_001384190 RefSeq | MGI Sequence Detail 725 C57BL/6  
polypeptide A0A1B0GQX3 UniProt | EBI | MGI Sequence Detail 59 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9
References
more
  • Summaries
    All 18
    Diseases 1
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:315008 Oyama Y, et al., CRISPR/Cas9-mediated genome editing reveals 12 testis-enriched genes dispensable for male fertility in mice. Asian J Androl. 2021 Jul 16;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory