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4930542C12Rik Gene Detail
Summary
  • Symbol
    4930542C12Rik
  • Name
    RIKEN cDNA 4930542C12 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914898
    NCBI Gene: 67648
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:78297733-78303440 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 43.65 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    254 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914898
 lncRNA gene Chr9:78297733-78303440 (-)
129S1/SvImJ ENSMUSG00200020010
 lncRNA gene Chr9:75453023-75454222 (-)
A/J ENSMUSG00195010605
 lncRNA gene Chr9:75237361-75238564 (-)
AKR/J ENSMUSG00220015086
 lncRNA gene Chr9:75343697-75344900 (-)
BALB/cJ ENSMUSG00180018492
 lncRNA gene Chr9:75350901-75352104 (-)
C3H/HeJ ENSMUSG00175011998
 lncRNA gene Chr9:75409757-75410960 (-)
C57BL/6NJ ENSMUSG00215017781
 lncRNA gene Chr9:75289023-75290225 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004215
 antisense lncRNA gene Chr9:75407404-75408603 (-)
CAST/EiJ ENSTCUG00005009625
 lncRNA gene Chr9:74988166-74989362 (-)
CBA/J ENSMUSG00210013325
 lncRNA gene Chr9:75442678-75443881 (-)
DBA/2J ENSMUSG00185007392
 lncRNA gene Chr9:75470994-75472197 (-)
FVB/NJ ENSMUSG00205029883
 lncRNA gene Chr9:75631703-75632906 (-)
JF1/MsJ ENSUMUG00000039860
 lncRNA gene Chr9:75375235-75376429 (-)
LP/J ENSMUSG00230026154
 lncRNA gene Chr9:75604620-75605819 (-)
NOD/ShiLtJ ENSMUSG00190039860
 lncRNA gene Chr9:75547068-75548271 (-)
NZO/HlLtJ ENSMUSG00225025828
 lncRNA gene Chr9:75768944-75770147 (-)
PWK/PhJ ENSLUMG00010016027
 lncRNA gene Chr9:75308370-75309568 (-)
SPRET/EiJ ENSMSPG00010004370
 lncRNA gene Chr9:76540043-76541242 (-)
WSB/EiJ ENSIUOG00005027256
 lncRNA gene Chr9:74875632-74876831 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 4930542C12Rik
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    28
  • UniProt
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090724 Ensembl Gene Model | MGI Sequence Detail 5708 C57BL/6J ±  kb
transcript ENSMUST00000171096 Ensembl | MGI Sequence Detail 1203 Not Applicable  
polypeptide Q9D4X9 UniProt | EBI | MGI Sequence Detail 193 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 18
    Phenotypes 7
  • Earliest
    J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory