4930517G24Rik Gene Detail

Summary

• Symbol
  4930517G24Rik
• Name
  RIKEN cDNA 4930517G24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914894
  NCBI Gene: 67644
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:107931962-107944341 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  415 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914894	lncRNA gene	Chr8:107931908-107998777 (+)
129S1/SvImJ	ENSMUSG00200015147	lncRNA gene	Chr8:102213329-102225901 (+)
A/J	ENSMUSG00195021537	lncRNA gene	Chr8:102535722-102548301 (+)
AKR/J	ENSMUSG00220015268	lncRNA gene	Chr8:102674713-102687292 (+)
BALB/cJ	ENSMUSG00180026751	lncRNA gene	Chr8:102541497-102554076 (+)
C3H/HeJ	ENSMUSG00175026044	lncRNA gene	Chr8:102598502-102611074 (+)
C57BL/6NJ	ENSMUSG00215038371	lncRNA gene	Chr8:102211618-102223985 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035089	lncRNA gene	Chr8:101966449-101978602 (+)
CBA/J	ENSMUSG00210037168	lncRNA gene	Chr8:102525837-102538413 (+)
DBA/2J	ENSMUSG00185005862	lncRNA gene	Chr8:108634592-108647164 (+)
FVB/NJ	ENSMUSG00205018575	lncRNA gene	Chr8:101509412-101521985 (+)
JF1/MsJ	ENSUMUG00000016952	lncRNA gene	Chr8:110967763-110980336 (+)
LP/J	ENSMUSG00230036437	lncRNA gene	Chr8:112314859-112327431 (+)
NOD/ShiLtJ	ENSMUSG00190029248	lncRNA gene	Chr8:102660050-102672624 (+)
NZO/HlLtJ	ENSMUSG00225023285	lncRNA gene	Chr8:115665446-115678022 (+)
PWK/PhJ	ENSLUMG00010029956	lncRNA gene	Chr8:102446115-102458475 (+)
SPRET/EiJ	ENSMSPG00010042475	lncRNA gene	Chr8:104514553-104526606 (+)
WSB/EiJ	ENSIUOG00005032851	lncRNA gene	Chr8:103344682-103357050 (+)

Homology

• Gene Tree
  4930517G24Rik
  

Expression

• cDNA Data
  5

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  2

• Ensembl
  ENSMUSG00000120083 (Evidence)
• NCBI Gene
  67644

Representative Sequences			Length	Strain/Species
genomic	67644	NCBI Gene Model | MGI Sequence Detail	12380	C57BL/6J
transcript	NR_166498	RefSeq | MGI Sequence Detail	707	ZRU/MplStud

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930517G24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79293	Chr8:107931948-107931985 (+)	5 bp
Tssr79294	Chr8:107931999-107932006 (+)	41 bp