4930518J20Rik Gene Detail

Summary

• Symbol
  4930518J20Rik
• Name
  RIKEN cDNA 4930518J20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914839
  NCBI Gene: 67589
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:156131059-156132536 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914839	lncRNA gene	Chr1:156131059-156132536 (+)
129S1/SvImJ	ENSMUSG00200006635	lncRNA gene	Chr1:153580924-153582410 (+)
A/J	ENSMUSG00195023443	lncRNA gene	Chr1:152961673-152963166 (+)
AKR/J	ENSMUSG00220006204	lncRNA gene	Chr1:152760958-152762451 (+)
BALB/cJ	ENSMUSG00180037579	lncRNA gene	Chr1:153180822-153182315 (+)
C3H/HeJ	ENSMUSG00175002901	lncRNA gene	Chr1:153225247-153226740 (+)
C57BL/6NJ	ENSMUSG00215040430	lncRNA gene	Chr1:153117220-153118697 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002420	antisense lncRNA gene	Chr1:146967430-146968899 (+)
CAST/EiJ	ENSTCUG00005005995	lncRNA gene	Chr1:151774224-151775723 (+)
CBA/J	ENSMUSG00210021791	lncRNA gene	Chr1:153123333-153124826 (+)
DBA/2J	ENSMUSG00185048581	lncRNA gene	Chr1:157400030-157401523 (+)
FVB/NJ	ENSMUSG00205029753	lncRNA gene	Chr1:152255746-152257239 (+)
JF1/MsJ	ENSUMUG00000023506	lncRNA gene	Chr1:156551991-156553484 (+)
LP/J	ENSMUSG00230017237	lncRNA gene	Chr1:156963032-156964514 (+)
NOD/ShiLtJ	ENSMUSG00190041537	lncRNA gene	Chr1:152971501-152972994 (+)
NZO/HlLtJ	ENSMUSG00225006554	lncRNA gene	Chr1:160633897-160635379 (+)
PWK/PhJ	ENSLUMG00010031259	lncRNA gene	Chr1:151913534-151915027 (+)
SPRET/EiJ	ENSMSPG00010042807	lncRNA gene	Chr1:155260435-155261904 (+)
WSB/EiJ	ENSIUOG00005024136	lncRNA gene	Chr1:152551573-152553055 (+)

Homology

• Gene Tree
  4930518J20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving 4930518J20Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000103705 (Evidence)
• NCBI Gene
  67589

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103705	Ensembl Gene Model | MGI Sequence Detail	1478	C57BL/6J
transcript	ENSMUST00000195064	Ensembl | MGI Sequence Detail	1478	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:2138523

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930518J20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9559	Chr1:156131035-156131040 (+)	-21 bp
Tssr9560	Chr1:156131043-156131071 (+)	-2 bp
Tssr9561	Chr1:156131073-156131080 (+)	18 bp