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Ankrd39 Gene Detail
Summary
  • Symbol
    Ankrd39
  • Name
    ankyrin repeat domain 39
  • Synonyms
    9130416N05Rik, C030004B10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914816
    NCBI Gene: 109346
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:36577252-36586333 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 15.32 cM, cytoband B
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    349 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914816
 protein coding gene Chr1:36576588-36586526 (-)
129S1/SvImJ ENSMUSG00200003661
 protein coding gene Chr1:34164956-34174895 (-)
A/J ENSMUSG00195039198
 protein coding gene Chr1:33785240-33795190 (-)
AKR/J ENSMUSG00220008353
 protein coding gene Chr1:33807134-33817073 (-)
BALB/cJ ENSMUSG00180010927
 protein coding gene Chr1:33910287-33920228 (-)
C3H/HeJ ENSMUSG00175001179
 protein coding gene Chr1:33789348-33799295 (-)
C57BL/6NJ ENSMUSG00215013211
 protein coding gene Chr1:33887247-33897188 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014040
 protein coding gene Chr1:31190858-31198373 (-)
CAST/EiJ ENSTCUG00005002702
 protein coding gene Chr1:33964709-33974665 (-)
CBA/J ENSMUSG00210005159
 protein coding gene Chr1:33632444-33642381 (-)
DBA/2J ENSMUSG00185009587
 protein coding gene Chr1:34716726-34726664 (-)
FVB/NJ ENSMUSG00205024846
 protein coding gene Chr1:33811379-33821318 (-)
JF1/MsJ ENSUMUG00000015299
 protein coding gene Chr1:33931002-33940949 (-)
LP/J ENSMUSG00230022970
 protein coding gene Chr1:34785798-34795737 (-)
NOD/ShiLtJ ENSMUSG00190026338
 protein coding gene Chr1:33827372-33837313 (-)
NZO/HlLtJ ENSMUSG00225013492
 protein coding gene Chr1:38020516-38030455 (-)
PWK/PhJ ENSLUMG00010034302
 protein coding gene Chr1:33459744-33469755 (-)
SPRET/EiJ ENSMSPG00010028095
 protein coding gene Chr1:34945609-34954330 (-)
WSB/EiJ ENSIUOG00005035608
 protein coding gene Chr1:33775131-33785137 (-)



Homology
more
  • Human Ortholog
    ANKRD39, ankyrin repeat domain 39
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ANKRD39, ankyrin repeat domain 39
  • Links
    NCBI Gene ID: 51239
    UniProt: Q53RE8

  • Chr Location
    2q11.2; chr2:96836611-96858016 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    609
  • Tissues
    2
  • cDNA Data
    23
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 109346 NCBI Gene Model | MGI Sequence Detail 9082 C57BL/6J ±  kb
transcript NR_132321 RefSeq | MGI Sequence Detail 2031 C57BL/6  
polypeptide Q9D2X0 UniProt | EBI | MGI Sequence Detail 183 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 5
Other
Accession IDs
less
MGI:1926103
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory