4933424M12Rik Gene Detail

Summary

• Symbol
  4933424M12Rik
• Name
  RIKEN cDNA 4933424M12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914798
  NCBI Gene: 67548
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:107640883-107647119 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 50.18 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  252 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914798	lncRNA gene	Chr4:107637364-107647125 (+)
129S1/SvImJ	ENSMUSG00200050359	lncRNA gene	Chr4:102692271-102698511 (+)
A/J	ENSMUSG00195048264	lncRNA gene	Chr4:103235179-103241420 (+)
AKR/J	ENSMUSG00220012375	lncRNA gene	Chr4:102635636-102642083 (+)
BALB/cJ	ENSMUSG00180046862	lncRNA gene	Chr4:102072307-102078753 (+)
C3H/HeJ	ENSMUSG00175041803	lncRNA gene	Chr4:103076760-103083204 (+)
C57BL/6NJ	ENSMUSG00215033629	lncRNA gene	Chr4:102973002-102979243 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005900	lincRNA gene	Chr4:99894763-99900432 (+)
CAST/EiJ	ENSTCUG00005022312	lncRNA gene	Chr4:102186785-102193045 (+)
CBA/J	ENSMUSG00210053268	lncRNA gene	Chr4:102709838-102716282 (+)
DBA/2J	ENSMUSG00185050221	lncRNA gene	Chr4:103420869-103427110 (+)
FVB/NJ	ENSMUSG00205016624	lncRNA gene	Chr4:101646823-101653064 (+)
JF1/MsJ	ENSUMUG00000050789	lncRNA gene	Chr4:103433482-103439720 (+)
LP/J	ENSMUSG00230009417	lncRNA gene	Chr4:106728717-106734956 (+)
NOD/ShiLtJ	ENSMUSG00190047255	lncRNA gene	Chr4:102079596-102086044 (+)
NZO/HlLtJ	ENSMUSG00225032883	lncRNA gene	Chr4:111839440-111845679 (+)
PWK/PhJ	ENSLUMG00010048764	lncRNA gene	Chr4:101151718-101157970 (+)
SPRET/EiJ	ENSMSPG00010029312	lncRNA gene	Chr4:103389722-103395895 (+)
WSB/EiJ	ENSIUOG00005043678	lncRNA gene	Chr4:102286875-102293112 (+)

Homology

• Gene Tree
  4933424M12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 4933424M12Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2

• Ensembl
  ENSMUSG00000087289 (Evidence)
• NCBI Gene
  67548

Representative Sequences			Length	Strain/Species
genomic	67548	NCBI Gene Model | MGI Sequence Detail	6237	C57BL/6J
transcript	NR_166201	RefSeq | MGI Sequence Detail	1724	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for 4933424M12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38266	Chr4:107640898-107640917 (+)	25 bp