4930404I05Rik Gene Detail

Summary

• Symbol
  4930404I05Rik
• Name
  RIKEN cDNA 4930404I05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914644
  NCBI Gene: 67394
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:90808137-90813391 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 52.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914644	lncRNA gene	Chr16:90808132-90813631 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015326	unclassified non-coding RNA gene	Chr16:91991633-91997134 (+)
A/J	MGP_AJ_G0015301	unclassified non-coding RNA gene	Chr16:87701316-87706810 (+)
AKR/J	MGP_AKRJ_G0015264	unclassified non-coding RNA gene	Chr16:90340632-90346128 (+)
BALB/cJ	MGP_BALBcJ_G0015264	unclassified non-coding RNA gene	Chr16:88221228-88226722 (+)
C3H/HeJ	MGP_C3HHeJ_G0015088	unclassified non-coding RNA gene	Chr16:90906950-90912444 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015718	unclassified non-coding RNA gene	Chr16:94975821-94981315 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013460	unclassified non-coding RNA gene	Chr16:85406696-85412396 (+)
CAST/EiJ	MGP_CASTEiJ_G0014639	unclassified non-coding RNA gene	Chr16:91458493-91463977 (+)
CBA/J	MGP_CBAJ_G0015067	unclassified non-coding RNA gene	Chr16:99027218-99032733 (+)
DBA/2J	MGP_DBA2J_G0015162	unclassified non-coding RNA gene	Chr16:87599956-87605471 (+)
FVB/NJ	MGP_FVBNJ_G0015169	unclassified non-coding RNA gene	Chr16:86730555-86736043 (+)
LP/J	MGP_LPJ_G0015242	unclassified non-coding RNA gene	Chr16:91686575-91692072 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015195	unclassified non-coding RNA gene	Chr16:103594584-103600069 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015758	unclassified non-coding RNA gene	Chr16:90852614-90858096 (+)
PWK/PhJ	MGP_PWKPhJ_G0014429	unclassified non-coding RNA gene	Chr16:87773045-87778525 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014217	unclassified non-coding RNA gene	Chr16:90414241-90419732 (+)
WSB/EiJ	MGP_WSBEiJ_G0014746	unclassified non-coding RNA gene	Chr16:91097657-91103151 (+)

Homology

• Gene Tree
  4930404I05Rik
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  66 phenotype references
  

• All Mutations and Alleles
  8
• Spontaneous
  1
• Targeted
  6
• Genomic Mutations
  8 involving 4930404I05Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000087354 (Evidence)
• NCBI Gene
  67394

Representative Sequences			Length	Strain/Species
genomic	67394	NCBI Gene Model | MGI Sequence Detail	5255	C57BL/6J
transcript	NR_028368	RefSeq | MGI Sequence Detail	978	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 76

  Diseases 4

  Phenotypes 66
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for 4930404I05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139323	Chr16:90808128-90808155 (+)	5 bp
Tssr139324	Chr16:90808166-90808184 (+)	38 bp
Tssr139325	Chr16:90808233-90808244 (+)	102 bp