1700095B10Rik Gene Detail

Summary

• Symbol
  1700095B10Rik
• Name
  RIKEN cDNA 1700095B10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914610
  NCBI Gene: 67360
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:112941158-112949567 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  425 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914610	lncRNA gene	Chr5:112941118-112951304 (+)
129S1/SvImJ	ENSMUSG00200024157	lncRNA gene	Chr5:106685415-106693823 (+)
A/J	ENSMUSG00195043185	lncRNA gene	Chr5:106195481-106203848 (+)
AKR/J	ENSMUSG00220052419	lncRNA gene	Chr5:105709751-105718157 (+)
BALB/cJ	ENSMUSG00180048645	lncRNA gene	Chr5:106335798-106344209 (+)
C3H/HeJ	ENSMUSG00175048989	lncRNA gene	Chr5:108316868-108325277 (+)
C57BL/6NJ	ENSMUSG00215035610	lncRNA gene	Chr5:106340282-106348692 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003734	antisense lncRNA gene	Chr5:105730898-105739368 (+)
CAST/EiJ	ENSTCUG00005033193	lncRNA gene	Chr5:105519016-105527132 (+)
CBA/J	ENSMUSG00210044710	lncRNA gene	Chr5:107068945-107077357 (+)
DBA/2J	ENSMUSG00185048305	lncRNA gene	Chr5:110111139-110119552 (+)
FVB/NJ	ENSMUSG00205051944	lncRNA gene	Chr5:105973535-105981943 (+)
JF1/MsJ	ENSUMUG00000053924	lncRNA gene	Chr5:112955998-112964437 (+)
LP/J	ENSMUSG00230049635	lncRNA gene	Chr5:114223702-114232110 (+)
NOD/ShiLtJ	ENSMUSG00190050135	lncRNA gene	Chr5:106009017-106017424 (+)
NZO/HlLtJ	ENSMUSG00225025873	lncRNA gene	Chr5:121859888-121868296 (+)
PWK/PhJ	ENSLUMG00010041486	lncRNA gene	Chr5:104868808-104877209 (+)
SPRET/EiJ	ENSMSPG00010047413	lncRNA gene	Chr5:108126789-108135110 (+)
WSB/EiJ	ENSIUOG00005046063	lncRNA gene	Chr5:108709717-108718128 (+)

Homology

• Gene Tree
  1700095B10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700095B10Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  2

• Ensembl
  ENSMUSG00000098230 (Evidence)
• NCBI Gene
  67360

Representative Sequences			Length	Strain/Species
genomic	67360	NCBI Gene Model | MGI Sequence Detail	8410	C57BL/6J
transcript	NR_040675	RefSeq | MGI Sequence Detail	1047	ZRU/MplStud

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700095B10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48004	Chr5:112941122-112941131 (+)	-31 bp
Tssr48005	Chr5:112941143-112941163 (+)	-5 bp
Tssr48006	Chr5:112941197-112941204 (+)	43 bp