1700066J03Rik Gene Detail

Summary

• Symbol
  1700066J03Rik
• Name
  RIKEN cDNA 1700066J03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914589
  NCBI Gene: 67339
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:58294763-58296789 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 30.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914589	lncRNA gene	Chr13:58294760-58297854 (+)
129S1/SvImJ	ENSMUSG00200017208	lncRNA gene	Chr13:55177398-55180143 (+)
A/J	ENSMUSG00195046889	lncRNA gene	Chr13:54653652-54656394 (+)
AKR/J	ENSMUSG00220044819	lncRNA gene	Chr13:54190652-54193391 (+)
BALB/cJ	ENSMUSG00180017563	lncRNA gene	Chr13:54907960-54910700 (+)
C3H/HeJ	ENSMUSG00175041835	lncRNA gene	Chr13:54694061-54696804 (+)
C57BL/6NJ	ENSMUSG00215040160	lncRNA gene	Chr13:54701655-54704398 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004971	lincRNA gene	Chr13:53532808-53533702 (+)
CAST/EiJ	ENSTCUG00005041452	lncRNA gene	Chr13:55078752-55081506 (+)
CBA/J	ENSMUSG00210044540	lncRNA gene	Chr13:54898967-54901713 (+)
DBA/2J	ENSMUSG00185017718	lncRNA gene	Chr13:55731167-55733883 (+)
FVB/NJ	ENSMUSG00205046694	lncRNA gene	Chr13:54526218-54528961 (+)
JF1/MsJ	ENSUMUG00000036060	lncRNA gene	Chr13:55107220-55109936 (+)
LP/J	ENSMUSG00230034901	lncRNA gene	Chr13:65092225-65094966 (+)
NOD/ShiLtJ	ENSMUSG00190036462	lncRNA gene	Chr13:54755021-54757766 (+)
NZO/HlLtJ	ENSMUSG00225035127	lncRNA gene	Chr13:58798188-58800931 (+)
PWK/PhJ	ENSLUMG00010024637	lncRNA gene	Chr13:54042095-54044814 (+)
SPRET/EiJ	ENSMSPG00010043794	lncRNA gene	Chr13:54407942-54410845 (+)
WSB/EiJ	ENSIUOG00005027451	lncRNA gene	Chr13:54225533-54228272 (+)

Homology

• Gene Tree
  1700066J03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700066J03Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000097717 (Evidence)
• NCBI Gene
  67339

Representative Sequences			Length	Strain/Species
genomic	67339	NCBI Gene Model | MGI Sequence Detail	2027	C57BL/6J
transcript	NR_126543	RefSeq | MGI Sequence Detail	529	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700066J03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120063	Chr13:58296327-58296338 (+)	1,570 bp
Tssr120064	Chr13:58296352-58296362 (+)	1,594 bp
Tssr120065	Chr13:58296367-58296380 (+)	1,611 bp