3110045C21Rik Gene Detail

Summary

• Symbol
  3110045C21Rik
• Name
  RIKEN cDNA 3110045C21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914553
  NCBI Gene: 67303
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:169796978-169799965 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 76.84 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  234 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914553	lncRNA gene	Chr1:169796915-169800517 (+)
129S1/SvImJ	ENSMUSG00200046934	lncRNA gene	Chr1:167277223-167280962 (+)
A/J	ENSMUSG00195049743	lncRNA gene	Chr1:166595565-166599149 (+)
AKR/J	ENSMUSG00220034229	lncRNA gene	Chr1:166288575-166292133 (+)
BALB/cJ	ENSMUSG00180046430	lncRNA gene	Chr1:166855625-166859184 (+)
C3H/HeJ	ENSMUSG00175048218	lncRNA gene	Chr1:166933618-166937357 (+)
C57BL/6NJ	ENSMUSG00215045430	lncRNA gene	Chr1:166737658-166741218 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002441	antisense lncRNA gene	Chr1:160240491-160243327 (+)
CAST/EiJ	ENSTCUG00005046645	lncRNA gene	Chr1:165251720-165255330 (+)
CBA/J	ENSMUSG00210042480	lncRNA gene	Chr1:166821484-166825042 (+)
DBA/2J	ENSMUSG00185012286	lncRNA gene	Chr1:171038280-171041838 (+)
FVB/NJ	ENSMUSG00205039698	lncRNA gene	Chr1:165795741-165799480 (+)
JF1/MsJ	ENSUMUG00000014212	lncRNA gene	Chr1:170181479-170185035 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190043346	lncRNA gene	Chr1:166596005-166599742 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010034559	lncRNA gene	Chr1:165565620-165569199 (+)
SPRET/EiJ	ENSMSPG00010048846	lncRNA gene	Chr1:169135904-169139479 (+)
WSB/EiJ	ENSIUOG00005041188	lncRNA gene	Chr1:166003541-166007126 (+)

Homology

• Gene Tree
  3110045C21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Gene trapped
  1
• Genomic Mutations
  2 involving 3110045C21Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1

• Ensembl
  ENSMUSG00000097503 (Evidence)
• NCBI Gene
  67303

Representative Sequences			Length	Strain/Species
genomic	67303	NCBI Gene Model | MGI Sequence Detail	2988	C57BL/6J
transcript	NR_040438	RefSeq | MGI Sequence Detail	1137	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2138329

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 3110045C21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9919	Chr1:169796997-169797023 (+)	32 bp
Tssr9920	Chr1:169797334-169797342 (+)	360 bp