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Fam220a Gene Detail
Summary
  • Symbol
    Fam220a
  • Name
    family with sequence similarity 220, member A
  • Synonyms
    1500026F15Rik, 2810453I06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914488
    NCBI Gene: 67238
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:143534475-143550286 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 82.27 cM, cytoband G2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    109 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914488
 protein coding gene Chr5:143534463-143550286 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030334
 protein coding gene Chr5:148891233-148913743 (+)
A/J MGP_AJ_G0030303
 protein coding gene Chr5:142498572-142514420 (+)
AKR/J MGP_AKRJ_G0030235
 protein coding gene Chr5:146961843-146977343 (+)
BALB/cJ MGP_BALBcJ_G0030320
 protein coding gene Chr5:143742398-143763578 (+)
C3H/HeJ MGP_C3HHeJ_G0030031
 protein coding gene Chr5:147777511-147780699 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030765
 protein coding gene Chr5:154326600-154344158 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027983
 protein coding gene Chr5:136266529-136281135 (+)
CAST/EiJ MGP_CASTEiJ_G0029436
 protein coding gene Chr5:147277185-147280353 (+)
CBA/J MGP_CBAJ_G0030001
 protein coding gene Chr5:160691234-160694422 (+)
DBA/2J MGP_DBA2J_G0030151
 protein coding gene Chr5:142263434-142279860 (+)
FVB/NJ MGP_FVBNJ_G0030106
 protein coding gene Chr5:141472617-141475805 (+)
LP/J MGP_LPJ_G0030237
 protein coding gene Chr5:149488766-149507920 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030137
 protein coding gene Chr5:163066856-163086093 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030805
 protein coding gene Chr5:146816071-146833219 (+)
PWK/PhJ MGP_PWKPhJ_G0029151
 protein coding gene Chr5:141347708-141350868 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028987
 protein coding gene Chr5:144564955-144568907 (+)
WSB/EiJ MGP_WSBEiJ_G0029509
 protein coding gene Chr5:147609246-147612432 (+)



Homology
more
  • Human Ortholog
    FAM220A, family with sequence similarity 220 member A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM220A, family with sequence similarity 220 member A
  • Synonyms
    ACPIN1, C7orf70, SIPAR
  • Links
    NCBI Gene ID: 84792
    neXtProt AC: NX_Q7Z4H9
    UniProt: Q7Z4H9

  • Chr Location
    7p22.1; chr7:6329411-6348981 (-)  GRCh38
  • Human Ortholog
    FAM220BP, Putative SIPAR-like protein C9orf51
  • Synonyms
    C9orf51
  • Links
    NCBI Gene ID: 647044
    UniProt: B1ANY3

  • Chr Location
    9p13.1; chr9:38526662-38528814 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
    13
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67238 NCBI Gene Model | MGI Sequence Detail 15812 C57BL/6J ±  kb
transcript NM_026050 RefSeq | MGI Sequence Detail 2323 C57BL/6  
polypeptide NP_080326 RefSeq | MGI Sequence Detail 260 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 8
Other
Accession IDs
less
MGI:1916248, MGI:2141130
References
more
  • Summaries
    All 24
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:223391 Ren F, et al., Nuclear termination of STAT3 signaling through SIPAR (STAT3-Interacting Protein As a Repressor)-dependent recruitment of T cell tyrosine phosphatase TC-PTP. FEBS Lett. 2015 Jul 8;589(15):1890-6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory