2810449D17Rik Gene Detail

Summary

• Symbol
  2810449D17Rik
• Name
  RIKEN cDNA 2810449D17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914484
  NCBI Gene: 102631731
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:33369201-33397925 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  682 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914484	lncRNA gene	Chr19:33368959-33399074 (+)
129S1/SvImJ	ENSMUSG00200021234	lncRNA gene	Chr19:30090050-30091129 (+)
A/J	ENSMUSG00195036255	lncRNA gene	Chr19:30256255-30257334 (+)
AKR/J	ENSMUSG00220020293	lncRNA gene	Chr19:30321214-30322293 (+)
BALB/cJ	ENSMUSG00180035192	lncRNA gene	Chr19:30585148-30586227 (+)
C3H/HeJ	ENSMUSG00175025795	lncRNA gene	Chr19:29973997-29975076 (+)
C57BL/6NJ	ENSMUSG00215027629	lncRNA gene	Chr19:30008516-30009595 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018691	lncRNA gene	Chr19:29822417-29823495 (+)
CBA/J	ENSMUSG00210015100	lncRNA gene	Chr19:30217378-30218457 (+)
DBA/2J	ENSMUSG00185035228	lncRNA gene	Chr19:30589441-30590520 (+)
FVB/NJ	ENSMUSG00205013887	lncRNA gene	Chr19:29988879-29989950 (+)
JF1/MsJ	ENSUMUG00000048770	lncRNA gene	Chr19:30851708-30852785 (+)
LP/J	ENSMUSG00230035480	lncRNA gene	Chr19:31376308-31377387 (+)
NOD/ShiLtJ	ENSMUSG00190022283	lncRNA gene	Chr19:29958572-29959651 (+)
NZO/HlLtJ	ENSMUSG00225029939	lncRNA gene	Chr19:35153497-35154570 (+)
PWK/PhJ	ENSLUMG00010035298	lncRNA gene	Chr19:30210095-30211173 (+)
SPRET/EiJ	ENSMSPG00010039383	lncRNA gene	Chr19:30212768-30213772 (+)
WSB/EiJ	ENSIUOG00005029149	lncRNA gene	Chr19:29669560-29670636 (+)

Homology

• Gene Tree
  2810449D17Rik
  

Expression

• cDNA Data
  6

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000120362 (Evidence)
• NCBI Gene
  102631731

Representative Sequences			Length	Strain/Species
genomic	102631731	NCBI Gene Model | MGI Sequence Detail	28725	C57BL/6J
transcript	NR_166828	RefSeq | MGI Sequence Detail	1646	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2147550, MGI:2147700, MGI:5589157

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2810449D17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156012	Chr19:33369195-33369244 (+)	19 bp