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2700038G22Rik Gene Detail
Summary
  • Symbol
    2700038G22Rik
  • Name
    RIKEN cDNA 2700038G22 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914444
    NCBI Gene: 67194
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:24055595-24060031 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 10.49 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    127 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914444
 lncRNA gene Chr5:24055531-24060036 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006591
 lincRNA gene Chr5:21540835-21551301 (+)
A/J MGP_AJ_G0006584
 lincRNA gene Chr5:20816096-20820731 (+)
AKR/J MGP_AKRJ_G0006554
 lincRNA gene Chr5:21662156-21668512 (+)
BALB/cJ MGP_BALBcJ_G0006559
 lincRNA gene Chr5:21325342-21338103 (+)
C3H/HeJ MGP_C3HHeJ_G0006506
 lincRNA gene Chr5:21759832-21762071 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006723
 lincRNA gene Chr5:23020294-23026876 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005992
 lincRNA gene Chr5:18768730-18773172 (+)
CAST/EiJ MGP_CASTEiJ_G0006432
 lincRNA gene Chr5:20938223-20966664 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0006509
 lincRNA gene Chr5:21100661-21110024 (+)
FVB/NJ MGP_FVBNJ_G0006532
 lincRNA gene Chr5:20495540-20499838 (+)
LP/J MGP_LPJ_G0006591
 lincRNA gene Chr5:21931359-21941400 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0006729
 lincRNA gene Chr5:21283787-21287136 (+)
PWK/PhJ MGP_PWKPhJ_G0006370
 lincRNA gene Chr5:20184995-20190443 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0006482
 lincRNA gene Chr5:21357730-21362983 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
  • All Mutations and Alleles
    29
  • Chemically induced (other)
    2
  • Gene trapped
    25
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving 2700038G22Rik
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    32
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 67194 NCBI Gene Model | MGI Sequence Detail 4437 C57BL/6J ±  kb
transcript NR_045040 RefSeq | MGI Sequence Detail 1370 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 1
References
more
  • Summaries
    All 28
    Diseases 1
    Phenotypes 17
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory