Sgms1os1 MGI Mouse Gene Detail - MGI:1914438 - Sgms1 opposite strand transcript 1

Symbol

Sgms1os1
Name

Sgms1 opposite strand transcript 1
Synonyms

2700046G09Rik

Feature Type

lncRNA gene
IDs

MGI:1914438
NCBI Gene: 67188
Alliance

genome feature page
Transcription Start Sites

5 TSS

Sequence Map

Chr19:32366616-32368584 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 19, 27.10 cM, cytoband C3
Mapping Data

2 experiments

SNPs within 2kb

123 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914438	lncRNA gene	Chr19:32364797-32372888 (+)
129S1/SvImJ	ENSMUSG00200020974	lncRNA gene	Chr19:29094605-29096721 (+)
A/J	ENSMUSG00195035948	lncRNA gene	Chr19:29256147-29258263 (+)
AKR/J	ENSMUSG00220019846	lncRNA gene	Chr19:29312818-29314934 (+)
BALB/cJ	ENSMUSG00180013761	lncRNA gene	Chr19:29585090-29587206 (+)
C3H/HeJ	ENSMUSG00175025985	lncRNA gene	Chr19:28965922-28968038 (+)
C57BL/6NJ	ENSMUSG00215028404	lncRNA gene	Chr19:29005724-29007838 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005296	lincRNA gene	Chr19:29383238-29385211 (+)
CAST/EiJ	ENSTCUG00005018373	lncRNA gene	Chr19:28835653-28837769 (+)
CBA/J	ENSMUSG00210014923	lncRNA gene	Chr19:29209358-29211474 (+)
DBA/2J	ENSMUSG00185026500	lncRNA gene	Chr19:29581354-29583470 (+)
FVB/NJ	ENSMUSG00205013062	lncRNA gene	Chr19:28987751-28989867 (+)
JF1/MsJ	ENSUMUG00000040906	lncRNA gene	Chr19:29844500-29846614 (+)
LP/J	ENSMUSG00230035552	lncRNA gene	Chr19:30380929-30383045 (+)
NOD/ShiLtJ	ENSMUSG00190022041	lncRNA gene	Chr19:28955705-28957821 (+)
NZO/HlLtJ	ENSMUSG00225029802	lncRNA gene	Chr19:34152128-34154242 (+)
PWK/PhJ	ENSLUMG00010034248	lncRNA gene	Chr19:29209198-29211312 (+)
SPRET/EiJ	ENSMSPG00010038516	lncRNA gene	Chr19:29186883-29188999 (+)
WSB/EiJ	ENSIUOG00005028094	lncRNA gene	Chr19:28664973-28667089 (+)

Human Ortholog

SGMS1-AS1, SGMS1 antisense RNA 1

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

SGMS1-AS1, SGMS1 antisense RNA 1
Links

HGNC:49683

NCBI Gene ID: 104355295
Chr Location

10q11.23; chr10:50623466-50676367 (+) GRCh38

MGI Vertebrate Homology

Sgms1os1 stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: SGMS1-AS1
Gene Tree

Sgms1os1

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

2
Gene trapped

2
Find Mice (IMSR)

0 strains or lines available

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All GO Annotations

4
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

13

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

46
RefSeq

1
UniProt

2

Ensembl

ENSMUSG00000097787 (Evidence)
NCBI Gene

67188

			Length	Strain/Species	Flank
genomic	67188	NCBI Gene Model \| MGI Sequence Detail	1969	C57BL/6J	± kb
transcript	NR_033198	RefSeq \| MGI Sequence Detail	1641	C57BL/6
polypeptide	Q8CBN0	UniProt \| EBI \| MGI Sequence Detail	140	Not Applicable

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UniProt

2 Sequences

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All nucleic 13

cDNA 13

Microarray probesets 1

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MGI:7398552

Summaries

All 18

Gene Ontology 1

Phenotypes 2
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:201967 Lin ST, et al., MicroRNA-23a promotes myelination in the central nervous system. Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17468-73

TSS for Sgms1os1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155955	Chr19:32364955-32364962 (+)	-1,657 bp
Tssr155956	Chr19:32364974-32364985 (+)	-1,636 bp
Tssr155957	Chr19:32365918-32365930 (+)	-692 bp
Tssr155958	Chr19:32366602-32366657 (+)	14 bp
Tssr5482	Chr19:32366825-32366864 (+)	229 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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