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Zmat5 Gene Detail
Summary
  • Symbol
    Zmat5
  • Name
    zinc finger, matrin type 5
  • Synonyms
    2610510L01Rik, D11Bwg0572e, D11Bwg1548e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914428
    NCBI Gene: 67178
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:4654678-4687669 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 2.96 cM, cytoband A1
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1594 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914428
 protein coding gene Chr11:4654671-4687669 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017987
 protein coding gene Chr11:1681492-1719590 (+)
A/J MGP_AJ_G0017960
 protein coding gene Chr11:1652376-1687755 (+)
AKR/J MGP_AKRJ_G0017924
 protein coding gene Chr11:1723560-1764935 (+)
BALB/cJ MGP_BALBcJ_G0017928
 protein coding gene Chr11:1629540-1663307 (+)
C3H/HeJ MGP_C3HHeJ_G0017741
 protein coding gene Chr11:1618522-1654404 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018380
 protein coding gene Chr11:1750394-1788639 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016038
 protein coding gene Chr11:1546697-1581812 (+)
CAST/EiJ MGP_CASTEiJ_G0017303
 protein coding gene Chr11:1590675-1628799 (+)
CBA/J MGP_CBAJ_G0017716
 protein coding gene Chr11:2021942-2061315 (+)
DBA/2J MGP_DBA2J_G0017826
 protein coding gene Chr11:1556768-1591408 (+)
FVB/NJ MGP_FVBNJ_G0017818
 protein coding gene Chr11:1595424-1629004 (+)
LP/J MGP_LPJ_G0017897
 protein coding gene Chr11:1772839-1812186 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017844
 protein coding gene Chr11:1690720-1729215 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018420
 protein coding gene Chr11:1731272-1766380 (+)
PWK/PhJ MGP_PWKPhJ_G0017083
 protein coding gene Chr11:1565426-1599362 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016880
 protein coding gene Chr11:1701750-1737565 (+)
WSB/EiJ MGP_WSBEiJ_G0017357
 protein coding gene Chr11:1606103-1643941 (+)



Homology
more
  • Human Ortholog
    ZMAT5, zinc finger matrin-type 5
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZMAT5, zinc finger matrin-type 5
  • Synonyms
    SNRNP20, U11/U12-20K, ZC3H19
  • Links
    NCBI Gene ID: 55954
    UniProt: Q9UDW3

  • Chr Location
    22q12.2; chr22:29730956-29767011 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    767
  • Tissues
    40
  • cDNA Data
    11
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000009076 Ensembl Gene Model | MGI Sequence Detail 32992 C57BL/6J ±  kb
    transcript ENSMUST00000009220 Ensembl | MGI Sequence Detail 792 Not Applicable  
    polypeptide ENSMUSP00000009220 Ensembl | MGI Sequence Detail 170 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 14
      cDNA 11
      Primer pair 3

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGD-MRK-34059, MGD-MRK-35728, MGI:106366, MGI:107263
    References
    more
    • Summaries
      All 41
      Developmental Gene Expression 4
      Gene Ontology 2
      Phenotypes 10
    • Earliest
      J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    03/25/2025
    MGI 6.24     		The Jackson Laboratory