1700019D03Rik MGI Mouse Gene Detail - MGI:1914330

Symbol

1700019D03Rik
Name

RIKEN cDNA 1700019D03 gene
Synonyms

2410136C24Rik, MGC:58779

Feature Type

protein coding gene
IDs

MGI:1914330
NCBI Gene: 67080
Alliance

gene page
Transcription Start Sites

15 TSS

Sequence Map

Chr1:52961483-53031816 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 26.99 cM
Mapping Data

2 experiments

SNPs within 2kb

287 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914330	protein coding gene	Chr1:52961483-53059338 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0016013	protein coding gene	Chr1:52450669-52543900 (-)
A/J	MGP_AJ_G0015995	protein coding gene	Chr1:50692446-50773342 (-)
AKR/J	MGP_AKRJ_G0015951	protein coding gene	Chr1:51777208-51872116 (-)
BALB/cJ	MGP_BALBcJ_G0015952	protein coding gene	Chr1:50517414-50600814 (-)
C3H/HeJ	MGP_C3HHeJ_G0015784	protein coding gene	Chr1:52157696-52251381 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016403	protein coding gene	Chr1:54654881-54741012 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014121	protein coding gene	Chr1:41115418-41193841 (+)
CAST/EiJ	MGP_CASTEiJ_G0015365	protein coding gene	Chr1:51661322-51747646 (-)
CBA/J	MGP_CBAJ_G0015755	protein coding gene	Chr1:56111178-56205314 (-)
DBA/2J	MGP_DBA2J_G0015856	protein coding gene	Chr1:49963131-50050847 (-)
FVB/NJ	MGP_FVBNJ_G0015858	protein coding gene	Chr1:49412780-49513383 (-)
LP/J	MGP_LPJ_G0015927	protein coding gene	Chr1:52907712-52979356 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015878	protein coding gene	Chr1:59153405-59266980 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016451	protein coding gene	Chr1:51898511-51980260 (-)
PWK/PhJ	MGP_PWKPhJ_G0015151	protein coding gene	Chr1:49801338-49886366 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014931	protein coding gene	Chr1:51554427-51638688 (-)
WSB/EiJ	MGP_WSBEiJ_G0015428	protein coding gene	Chr1:51714326-51804136 (-)

Human Ortholog

C2orf88, chromosome 2 open reading frame 88

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C2orf88, chromosome 2 open reading frame 88
Synonyms

smAKAP
Links

HGNC:28191

NCBI Gene ID: 84281

neXtProt AC: NX_Q9BSF0

UniProt: Q9BSF0
Chr Location

2q32.2; chr2:189879479-190203484 (+) GRCh38.p7

Alliance of Genome Resources

1700019D03Rik stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: C2orf88
Gene Tree

1700019D03Rik

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Phenotype Summary

3 phenotypes from 1 allele in 1 genetic background
16 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

96
Chemically induced (other)

1
Gene trapped

90
Radiation induced

1
Targeted

4
Genomic Mutations

2 involving 1700019D03Rik
Incidental Mutations

APF
Find Mice (IMSR)

57 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

3
GO References

2

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

731
Tissues

25
cDNA Data

33
Literature Summary

3

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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1700019D03Rik interacts with 305 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

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All Sequences

63
RefSeq

16
UniProt

1
CCDS

CCDS14949.1

Ensembl

ENSMUSG00000043629 (Evidence)
NCBI Gene

67080

			Length	Strain/Species	Flank
genomic	67080	NCBI Gene Model \| MGI Sequence Detail	70334	C57BL/6J	± kb
transcript	NM_144953	RefSeq \| MGI Sequence Detail	3637	C57BL/6
polypeptide	Q9CPS8	UniProt \| EBI \| MGI Sequence Detail	106	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000060043 small membrane A-kinase anchor protein

(term hierarchy)
InterPro Domains

IPR027969 Small membrane A-kinase anchor protein

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All nucleic 34

cDNA 34

Microarray probesets 3

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MGI:1915212, MGI:2138094

Summaries

All 41

Developmental Gene Expression 3

Gene Ontology 2

Phenotypes 16
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:190524 Shalom-Barak T, et al., Placental PPARgamma regulates spatiotemporally diverse genes and a unique metabolic network. Dev Biol. 2012 Dec 1;372(1):143-55

TSS for 1700019D03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11644	Chr1:53031838-53031847 (-)	-27 bp
Tssr11643	Chr1:53011187-53011210 (-)	20,617 bp
Tssr11642	Chr1:53011173-53011180 (-)	20,639 bp
Tssr11641	Chr1:53002437-53002451 (-)	29,372 bp
Tssr11640	Chr1:53002427-53002428 (-)	29,388 bp
Tssr11639	Chr1:53002409-53002425 (-)	29,399 bp
Tssr11638	Chr1:53002382-53002393 (-)	29,428 bp
Tssr11637	Chr1:52992755-52992786 (-)	39,045 bp
Tssr11636	Chr1:52992338-52992383 (-)	39,455 bp
Tssr11635	Chr1:52992275-52992315 (-)	39,521 bp
Tssr11634	Chr1:52991993-52992013 (-)	39,813 bp
Tssr11633	Chr1:52991963-52991985 (-)	39,842 bp
Tssr11632	Chr1:52991840-52991868 (-)	39,962 bp
Tssr11631	Chr1:52987170-52987177 (-)	44,642 bp
Tssr11630	Chr1:52987146-52987168 (-)	44,659 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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