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Ly6m Gene Detail
Summary
  • Symbol
    Ly6m
  • Name
    lymphocyte antigen 6 family member M
  • Synonyms
    2010109I03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914288
    NCBI Gene: 67038
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:74750185-74753553 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 34.29 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    199 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914288
 protein coding gene Chr15:74748836-74768870 (-)
129S1/SvImJ ENSMUSG00200049755
 protein coding gene Chr15:71855842-71860645 (-)
A/J ENSMUSG00195042039
 protein coding gene Chr15:71923980-71928868 (-)
AKR/J ENSMUSG00220045432
 protein coding gene Chr15:71844570-71849387 (-)
BALB/cJ ENSMUSG00180046473
 protein coding gene Chr15:71696429-71701315 (-)
C3H/HeJ ENSMUSG00175043944
 protein coding gene Chr15:72058363-72063247 (-)
C57BL/6NJ ENSMUSG00215048617
 protein coding gene Chr15:71753632-71758449 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019885
 protein coding gene Chr15:68394844-68415819 (-)
CAST/EiJ no annotation
CBA/J ENSMUSG00210035142
 protein coding gene Chr15:71833694-71838579 (-)
DBA/2J ENSMUSG00185050467
 protein coding gene Chr15:71779149-71783966 (-)
FVB/NJ ENSMUSG00205035033
 protein coding gene Chr15:71525027-71529844 (-)
JF1/MsJ no annotation
LP/J ENSMUSG00230052056
 protein coding gene Chr15:75143201-75148018 (-)
NOD/ShiLtJ ENSMUSG00190049983
 protein coding gene Chr15:71890127-71895019 (-)
NZO/HlLtJ ENSMUSG00225050537
 protein coding gene Chr15:75416878-75421770 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    27 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    3
  • Endonuclease-mediated
    2
  • Gene trapped
    1
  • Radiation induced
    2
  • Genomic Mutations
    5 involving Ly6m
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    6 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    604
  • Tissues
    1
  • cDNA Data
    13
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67038 NCBI Gene Model | MGI Sequence Detail 3369 C57BL/6J ±  kb
transcript NM_025929 RefSeq | MGI Sequence Detail 1887 C57BL/6  
polypeptide NP_080205 RefSeq | MGI Sequence Detail 111 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR016054 Ly-6 antigen/uPA receptor-like
    IPR051110 Ly-6/neurotoxin-like and GPI-anchored
    IPR045860 Snake toxin-like superfamily
    IPR035076 Snake toxin/toxin-like
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 2
Other
Accession IDs
less
MGI:6278300
References
more
  • Summaries
    All 48
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 27
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory