4933404O12Rik Gene Detail

Summary

• Symbol
  4933404O12Rik
• Name
  RIKEN cDNA 4933404O12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914002
  NCBI Gene: 66752
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr5:136948000-136965963 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 76.03 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  732 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914002	lncRNA gene	Chr5:136944735-136965968 (+)
129S1/SvImJ	ENSMUSG00200048721	lncRNA gene	Chr5:130736643-130754914 (+)
A/J	ENSMUSG00195050855	lncRNA gene	Chr5:130239250-130257521 (+)
AKR/J	ENSMUSG00220051417	lncRNA gene	Chr5:129722663-129740795 (+)
BALB/cJ	ENSMUSG00180046719	lncRNA gene	Chr5:130335883-130354155 (+)
C3H/HeJ	ENSMUSG00175047729	lncRNA gene	Chr5:132263463-132281734 (+)
C57BL/6NJ	ENSMUSG00215049833	lncRNA gene	Chr5:130390763-130408768 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006221	lincRNA gene	Chr5:129763784-129783757 (+)
CAST/EiJ	ENSTCUG00005010646	lncRNA gene	Chr5:129616902-129634963 (+)
CBA/J	ENSMUSG00210008036	lncRNA gene	Chr5:131081023-131099294 (+)
DBA/2J	ENSMUSG00185054759	lncRNA gene	Chr5:134096417-134114688 (+)
FVB/NJ	ENSMUSG00205049860	lncRNA gene	Chr5:129980809-129999080 (+)
JF1/MsJ	ENSUMUG00000053885	lncRNA gene	Chr5:136998084-137016045 (+)
LP/J	ENSMUSG00230049742	lncRNA gene	Chr5:138209871-138228142 (+)
NOD/ShiLtJ	ENSMUSG00190048357	lncRNA gene	Chr5:130035706-130053977 (+)
NZO/HlLtJ	ENSMUSG00225023873	lncRNA gene	Chr5:145891478-145909749 (+)
PWK/PhJ	ENSLUMG00010018524	lncRNA gene	Chr5:128853656-128871614 (+)
SPRET/EiJ	ENSMSPG00010039096	lncRNA gene	Chr5:132251036-132268392 (+)
WSB/EiJ	ENSIUOG00005035506	lncRNA gene	Chr5:132693039-132711167 (+)

Homology

• Gene Tree
  4933404O12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  60
• Gene trapped
  60
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  14

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  81
• RefSeq
  1

• Ensembl
  ENSMUSG00000097908 (Evidence)
• NCBI Gene
  66752

Representative Sequences			Length	Strain/Species
genomic	66752	NCBI Gene Model | MGI Sequence Detail	17964	C57BL/6J
transcript	NR_015555	RefSeq | MGI Sequence Detail	3985	C57BL/6

Molecular
Reagents

• All nucleic 14

  cDNA 14

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2141202

References

• Summaries
  All 17

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4933404O12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49280	Chr5:136947991-136948042 (+)	17 bp
Tssr49281	Chr5:136948081-136948092 (+)	87 bp
Tssr49282	Chr5:136948192-136948235 (+)	214 bp
Tssr49283	Chr5:136948448-136948477 (+)	463 bp
Tssr49284	Chr5:136961792-136961812 (+)	13,802 bp