4921522P10Rik MGI Mouse Gene Detail - MGI:1913969

Symbol

4921522P10Rik
Name

RIKEN cDNA 4921522P10 gene

Feature Type

lncRNA gene
IDs

MGI:1913969
NCBI Gene: 66719
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr8:8711208-8715719 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 8, 3.56 cM, cytoband A1.3
Mapping Data

2 experiments

SNPs within 2kb

170 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913969	lncRNA gene	Chr8:8711208-8717153 (+)
129S1/SvImJ	ENSMUSG00200009958	protein coding gene	Chr8:5584707-5590230 (+)
129S1/SvImJ	ENSMUSG00200012787	lncRNA gene	Chr8:5585151-5588080 (+)
A/J	ENSMUSG00195008860	protein coding gene	Chr8:5948873-5954417 (+)
A/J	ENSMUSG00195010902	lncRNA gene	Chr8:5949336-5952265 (+)
AKR/J	ENSMUSG00220010192	protein coding gene	Chr8:5674464-5680002 (+)
AKR/J	ENSMUSG00220011548	lncRNA gene	Chr8:5674927-5677854 (+)
BALB/cJ	ENSMUSG00180004744	lncRNA gene	Chr8:5588471-5591398 (+)
BALB/cJ	ENSMUSG00180004250	protein coding gene	Chr8:5588008-5593546 (+)
C3H/HeJ	ENSMUSG00175008672	lncRNA gene	Chr8:5729190-5732117 (+)
C3H/HeJ	ENSMUSG00175007170	protein coding gene	Chr8:5728727-5734267 (+)
C57BL/6NJ	ENSMUSG00215009135	lncRNA gene	Chr8:5622855-5625784 (+)
C57BL/6NJ	ENSMUSG00215005624	protein coding gene	Chr8:5622392-5627934 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030806	protein coding gene	Chr8:5142143-5145215 (+)
CAST/EiJ	ENSTCUG00005020889	lncRNA gene	Chr8:5598779-5601875 (+)
CBA/J	ENSMUSG00210010421	protein coding gene	Chr8:5582059-5587601 (+)
CBA/J	ENSMUSG00210011348	lncRNA gene	Chr8:5582522-5585451 (+)
DBA/2J	ENSMUSG00185003535	protein coding gene	Chr8:5716813-5722353 (+)
DBA/2J	ENSMUSG00185004569	lncRNA gene	Chr8:5717276-5720203 (+)
FVB/NJ	ENSMUSG00205005994	lncRNA gene	Chr8:5642804-5645731 (+)
FVB/NJ	ENSMUSG00205004543	protein coding gene	Chr8:5642341-5647879 (+)
JF1/MsJ	ENSUMUG00000042575	lncRNA gene	Chr8:5706664-5709750 (+)
LP/J	ENSMUSG00230005453	protein coding gene	Chr8:7892427-7898142 (+)
LP/J	ENSMUSG00230008329	lncRNA gene	Chr8:7892871-7895990 (+)
NOD/ShiLtJ	ENSMUSG00190012113	lncRNA gene	Chr8:5700391-5703318 (+)
NOD/ShiLtJ	ENSMUSG00190010764	protein coding gene	Chr8:5699928-5705468 (+)
NZO/HlLtJ	ENSMUSG00225016618	protein coding gene	Chr8:15749482-15755197 (+)
NZO/HlLtJ	ENSMUSG00225018283	lncRNA gene	Chr8:15749926-15753045 (+)
PWK/PhJ	ENSLUMG00010011044	lncRNA gene	Chr8:5631606-5634660 (+)
SPRET/EiJ	ENSMSPG00010018735	lncRNA gene	Chr8:5714464-5717554 (+)
WSB/EiJ	ENSIUOG00005005328	lncRNA gene	Chr8:5611785-5614712 (+)

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Gene Tree

4921522P10Rik

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Phenotype Summary

1 phenotype reference

All Mutations and Alleles

2
Targeted

2
Find Mice (IMSR)

1 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

4

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

41
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000040467 (Evidence)
NCBI Gene

66719

			Length	Strain/Species	Flank
genomic	ENSMUSG00000040467	Ensembl Gene Model \| MGI Sequence Detail	4512	C57BL/6J	± kb
transcript	ENSMUST00000048606	Ensembl \| MGI Sequence Detail	2511	Not Applicable
polypeptide	Q9D5T6	UniProt \| EBI \| MGI Sequence Detail	102	Not Applicable

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UniProt

1 Sequence

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All nucleic 4

cDNA 4

Microarray probesets 2

Summaries

All 15

Phenotypes 1
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4921522P10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76155	Chr8:8711794-8711806 (+)	592 bp
Tssr76156	Chr8:8711807-8711817 (+)	604 bp
Tssr76157	Chr8:8711819-8711826 (+)	615 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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