4921507G05Rik Gene Detail

Summary

• Symbol
  4921507G05Rik
• Name
  RIKEN cDNA 4921507G05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1913959
  NCBI Gene: 66709
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:110807463-110810238 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 60.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913959	lncRNA gene	Chr12:110807404-110810246 (+)
129S1/SvImJ	ENSMUSG00200027556	lncRNA gene	Chr12:102583812-102586599 (+)
A/J	ENSMUSG00195046920	lncRNA gene	Chr12:105102135-105104920 (+)
AKR/J	ENSMUSG00220036467	lncRNA gene	Chr12:103001637-103004348 (+)
BALB/cJ	ENSMUSG00180050968	lncRNA gene	Chr12:104346908-104349695 (+)
C3H/HeJ	ENSMUSG00175050504	lncRNA gene	Chr12:106915533-106918320 (+)
C57BL/6NJ	ENSMUSG00215050960	lncRNA gene	Chr12:103619765-103622552 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004918	lincRNA gene	Chr12:105284548-105287644 (+)
CAST/EiJ	ENSTCUG00005020623	lncRNA gene	Chr12:103087227-103089923 (+)
CBA/J	ENSMUSG00210031742	lncRNA gene	Chr12:103976993-103979780 (+)
DBA/2J	ENSMUSG00185035014	lncRNA gene	Chr12:105804193-105806904 (+)
FVB/NJ	ENSMUSG00205039070	lncRNA gene	Chr12:103031690-103034477 (+)
JF1/MsJ	ENSUMUG00000025978	lncRNA gene	Chr12:110570247-110572932 (+)
LP/J	ENSMUSG00230044721	lncRNA gene	Chr12:112848441-112851228 (+)
NOD/ShiLtJ	ENSMUSG00190031820	lncRNA gene	Chr12:82195763-82198474 (-)
NZO/HlLtJ	ENSMUSG00225043129	lncRNA gene	Chr12:114596624-114599411 (+)
PWK/PhJ	ENSLUMG00010047399	lncRNA gene	Chr12:104027012-104029697 (+)
SPRET/EiJ	ENSMSPG00010025988	lncRNA gene	Chr12:106313327-106316108 (+)
WSB/EiJ	ENSIUOG00005039795	lncRNA gene	Chr12:103015035-103017822 (+)

Homology

• Gene Tree
  4921507G05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000097650 (Evidence)
• NCBI Gene
  66709

Representative Sequences			Length	Strain/Species
genomic	66709	NCBI Gene Model | MGI Sequence Detail	2776	C57BL/6J
transcript	NR_152102	RefSeq | MGI Sequence Detail	1653	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4921507G05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115236	Chr12:110807455-110807471 (+)	0 bp