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Msantd3 Gene Detail
Summary
  • Symbol
    Msantd3
  • Name
    Myb/SANT-like DNA-binding domain containing 3
  • Synonyms
    2410046L14Rik, 2810429P03Rik, 5730528L13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913915
    NCBI Gene: 66665
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:48539935-48561919 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 26.13 cM, cytoband B2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    106 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913915
 protein coding gene Chr4:48539532-48565892 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028275
 protein coding gene Chr4:46961658-46984778 (+)
A/J MGP_AJ_G0028235
 protein coding gene Chr4:45221821-45243944 (+)
AKR/J MGP_AKRJ_G0028184
 protein coding gene Chr4:46387038-46411151 (+)
BALB/cJ MGP_BALBcJ_G0028254
 protein coding gene Chr4:45332818-45354695 (+)
C3H/HeJ MGP_C3HHeJ_G0027975
 protein coding gene Chr4:46942084-46964551 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028695
 protein coding gene Chr4:48658640-48682016 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026004
 protein coding gene Chr4:42561824-42583506 (+)
CAST/EiJ MGP_CASTEiJ_G0027414
 protein coding gene Chr4:46542989-46566485 (+)
CBA/J MGP_CBAJ_G0027941
 protein coding gene Chr4:50233961-50260321 (+)
DBA/2J MGP_DBA2J_G0028091
 protein coding gene Chr4:45102548-45124277 (+)
FVB/NJ MGP_FVBNJ_G0028058
 protein coding gene Chr4:44366623-44388255 (+)
LP/J MGP_LPJ_G0028190
 protein coding gene Chr4:47024487-47048955 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028082
 protein coding gene Chr4:53241308-53264403 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028730
 protein coding gene Chr4:46571658-46593504 (+)
PWK/PhJ MGP_PWKPhJ_G0027139
 protein coding gene Chr4:45228575-45258686 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026967
 protein coding gene Chr4:46082484-46104810 (+)
WSB/EiJ MGP_WSBEiJ_G0027492
 protein coding gene Chr4:46500625-46525058 (+)



Homology
more
  • Human Ortholog
    MSANTD3, Myb/SANT DNA binding domain containing 3
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MSANTD3, Myb/SANT DNA binding domain containing 3
  • Synonyms
    C9orf30, L8
  • Links
    NCBI Gene ID: 91283
    neXtProt AC: NX_Q96H12
    UniProt: Q96H12

  • Chr Location
    9q31.1; chr9:100427143-100451734 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    24
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039693 Ensembl Gene Model | MGI Sequence Detail 21985 C57BL/6J ±  kb
transcript ENSMUST00000061135 Ensembl | MGI Sequence Detail 1589 Not Applicable  
polypeptide ENSMUSP00000056551 Ensembl | MGI Sequence Detail 275 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919413, MGI:1922086
References
more
  • Summaries
    All 31
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory