Fbxl12os Gene Detail

Summary

• Symbol
  Fbxl12os
• Name
  F-box and leucine-rich repeat protein 12, opposite strand
• Synonyms
  5730577I03Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1913912
  NCBI Gene: 66662
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:20518771-20528567 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 7.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  404 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913912	antisense lncRNA gene	Chr9:20518504-20528567 (+)
129S1/SvImJ	ENSMUSG00200047701	protein coding gene	Chr9:17478626-17492655 (+)
129S1/SvImJ	ENSMUSG00200050552	lncRNA gene	Chr9:17479427-17489244 (+)
A/J	ENSMUSG00195037288	protein coding gene	Chr9:17308395-17328819 (+)
A/J	ENSMUSG00195041080	lncRNA gene	Chr9:17309184-17319002 (+)
AKR/J	ENSMUSG00220029960	protein coding gene	Chr9:17310930-17331351 (+)
AKR/J	ENSMUSG00220035655	lncRNA gene	Chr9:17311719-17321534 (+)
BALB/cJ	ENSMUSG00180042012	protein coding gene	Chr9:17436341-17456764 (+)
BALB/cJ	ENSMUSG00180044852	lncRNA gene	Chr9:17437130-17446947 (+)
C3H/HeJ	ENSMUSG00175037124	protein coding gene	Chr9:17405115-17425536 (+)
C3H/HeJ	ENSMUSG00175044289	lncRNA gene	Chr9:17405904-17415719 (+)
C57BL/6NJ	ENSMUSG00215039226	lncRNA gene	Chr9:17403382-17413196 (+)
C57BL/6NJ	ENSMUSG00215026231	protein coding gene	Chr9:17402593-17423013 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004172	antisense lncRNA gene	Chr9:16611653-16622487 (+)
CAST/EiJ	ENSTCUG00005034395	lncRNA gene	Chr9:17446131-17455940 (+)
CBA/J	ENSMUSG00210042355	protein coding gene	Chr9:17386367-17406804 (+)
CBA/J	ENSMUSG00210044968	lncRNA gene	Chr9:17387156-17396981 (+)
DBA/2J	ENSMUSG00185027848	lncRNA gene	Chr9:17502396-17512211 (+)
DBA/2J	ENSMUSG00185022133	protein coding gene	Chr9:17501607-17522028 (+)
FVB/NJ	ENSMUSG00205030596	protein coding gene	Chr9:17741285-17755312 (+)
FVB/NJ	ENSMUSG00205045500	lncRNA gene	Chr9:17742084-17751901 (+)
JF1/MsJ	ENSUMUG00000049603	lncRNA gene	Chr9:17614331-17624133 (+)
LP/J	ENSMUSG00230042492	protein coding gene	Chr9:17891477-17911896 (+)
LP/J	ENSMUSG00230043750	lncRNA gene	Chr9:17892266-17902079 (+)
NOD/ShiLtJ	ENSMUSG00190041079	lncRNA gene	Chr9:17427603-17437426 (+)
NOD/ShiLtJ	ENSMUSG00190031777	protein coding gene	Chr9:17426814-17447249 (+)
NZO/HlLtJ	ENSMUSG00225050325	protein coding gene	Chr9:17850269-17864298 (+)
NZO/HlLtJ	ENSMUSG00225051584	lncRNA gene	Chr9:17851068-17860887 (+)
PWK/PhJ	ENSLUMG00010046982	lncRNA gene	Chr9:17504196-17514041 (+)
SPRET/EiJ	ENSMSPG00010024212	lncRNA gene	Chr9:17732990-17747278 (+)
WSB/EiJ	ENSIUOG00005047197	lncRNA gene	Chr9:16975578-16985385 (+)

Homology

• Gene Tree
  Fbxl12os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  15
• Gene trapped
  15
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  67
• RefSeq
  1
• UniProt
  2
• CCDS
  CCDS40545.1

• Ensembl
  ENSMUSG00000062470 (Evidence)
• NCBI Gene
  66662

Representative Sequences			Length	Strain/Species
genomic	66662	NCBI Gene Model | MGI Sequence Detail	9797	C57BL/6J
transcript	NR_033729	RefSeq | MGI Sequence Detail	2355	C57BL/6
polypeptide	Q8BRK5	UniProt | EBI | MGI Sequence Detail	108	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR036236 Zinc finger C2H2 superfamily
  IPR013087 Zinc finger C2H2-type

Molecular
Reagents

• All nucleic 14

  Genomic 2

  cDNA 12

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582