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Hoxaas2 Gene Detail
Summary
  • Symbol
    Hoxaas2
  • Name
    Hoxa cluster antisense RNA 2
  • Synonyms
    2810043O09Rik, 5730446D14Rik
Location &
Maps
more
  • Sequence Map
    Chr6:52142654-52146431 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 25.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    62 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913890
 lncRNA gene Chr6:52142654-52146544 (+)
129S1/SvImJ ENSMUSG00200005500
 lncRNA gene Chr6:49119967-49123856 (+)
A/J ENSMUSG00195007054
 lncRNA gene Chr6:48843867-48847782 (+)
AKR/J ENSMUSG00220004494
 lncRNA gene Chr6:48552956-48556848 (+)
BALB/cJ ENSMUSG00180025476
 lncRNA gene Chr6:49145586-49149496 (+)
C3H/HeJ ENSMUSG00175018262
 lncRNA gene Chr6:48912145-48916061 (+)
C57BL/6NJ ENSMUSG00215011345
 lncRNA gene Chr6:49096421-49100312 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013755
 unclassified non-coding RNA gene Chr6:46649267-46653176 (+)
CAST/EiJ ENSTCUG00005005120
 lncRNA gene Chr6:48402491-48406413 (+)
CBA/J ENSMUSG00210018521
 lncRNA gene Chr6:48956442-48960358 (+)
DBA/2J ENSMUSG00185013975
 lncRNA gene Chr6:49538693-49542606 (+)
FVB/NJ ENSMUSG00205031021
 lncRNA gene Chr6:49196820-49200735 (+)
JF1/MsJ ENSUMUG00000015782
 lncRNA gene Chr6:48911340-48915291 (+)
LP/J ENSMUSG00230019763
 lncRNA gene Chr6:50617272-50621161 (+)
NOD/ShiLtJ ENSMUSG00190036635
 lncRNA gene Chr6:48873841-48877757 (+)
NZO/HlLtJ ENSMUSG00225013825
 lncRNA gene Chr6:52601234-52605145 (+)
PWK/PhJ ENSLUMG00010021150
 lncRNA gene Chr6:48648398-48652286 (+)
SPRET/EiJ ENSMSPG00010010326
 lncRNA gene Chr6:49232335-49236269 (+)
WSB/EiJ ENSIUOG00005028910
 lncRNA gene Chr6:49219308-49223208 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    625
  • Tissues
    3
  • cDNA Data
    3
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 105242657 NCBI Gene Model | MGI Sequence Detail 3778 C57BL/6J ±  kb
transcript NR_131182 RefSeq | MGI Sequence Detail 1567 C57BL/6  
polypeptide Q52KM3 UniProt | EBI | MGI Sequence Detail 135 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    Genomic 1
    cDNA 3

    Microarray probesets 2
Other
Accession IDs
less
MGI:1924092
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:207500 Berlivet S, et al., Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. PLoS Genet. 2013 Dec;9(12):e1004018
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory