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Pantr2 Gene Detail
Summary
  • Symbol
    Pantr2
  • Name
    POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2
  • Synonyms
    2610207O16Rik, linc-Brn1b, Pou3f3os2
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1913870
    NCBI Gene: 66620
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:42746221-42752614 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    243 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913870
 lncRNA gene Chr1:42687360-42752940 (-)
129S1/SvImJ ENSMUSG00200004426
 lncRNA gene Chr1:40359913-40366630 (-)
A/J ENSMUSG00195043143
 lncRNA gene Chr1:40066470-40073210 (-)
AKR/J ENSMUSG00220009394
 lncRNA gene Chr1:40060760-40067463 (-)
BALB/cJ ENSMUSG00180012479
 lncRNA gene Chr1:40087128-40093864 (-)
C3H/HeJ ENSMUSG00175001396
 lncRNA gene Chr1:40074243-40080980 (-)
C57BL/6NJ ENSMUSG00215030156
 lncRNA gene Chr1:40062193-40068929 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013235
 unclassified non-coding RNA gene Chr1:37247934-37254380 (-)
CAST/EiJ ENSTCUG00005003213
 lncRNA gene Chr1:40141436-40148178 (-)
CBA/J ENSMUSG00210006196
 lncRNA gene Chr1:39825763-39832498 (-)
DBA/2J ENSMUSG00185011354
 lncRNA gene Chr1:40926896-40933632 (-)
FVB/NJ ENSMUSG00205035334
 lncRNA gene Chr1:40019468-40026205 (-)
JF1/MsJ ENSUMUG00000029644
 lncRNA gene Chr1:40148455-40155220 (-)
LP/J ENSMUSG00230027022
 lncRNA gene Chr1:40972786-40979521 (-)
NOD/ShiLtJ ENSMUSG00190042258
 lncRNA gene Chr1:40039267-40046002 (-)
NZO/HlLtJ ENSMUSG00225000716
 lncRNA gene Chr1:44209710-44216442 (-)
PWK/PhJ ENSLUMG00010036896
 lncRNA gene Chr1:39666175-39672926 (-)
SPRET/EiJ ENSMSPG00010013491
 lncRNA gene Chr1:41238606-41245345 (-)
WSB/EiJ ENSIUOG00005041053
 lncRNA gene Chr1:39975081-39981782 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele show decreased body weight, a decrease in the number of intermediate progenitor cells in the subventricular zone, decreased neocortex size, and a smaller and disorganized barrel cortex.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    602
  • Tissues
    5
  • cDNA Data
    2
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      34
    • RefSeq
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 66620 NCBI Gene Model | MGI Sequence Detail 6394 C57BL/6J ±  kb
    transcript NR_110495 RefSeq | MGI Sequence Detail 463 ZRU/MplStud  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 2
      cDNA 2
    References
    more
    • Summaries
      All 12
      Developmental Gene Expression 3
      Gene Ontology 2
      Phenotypes 5
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:233815 Lai KM, et al., Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs. PLoS One. 2015;10(4):e0125522
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory