Pantr2 MGI Mouse Gene Detail - MGI:1913870 - POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2

Symbol

Pantr2
Name

POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2
Synonyms

2610207O16Rik, linc-Brn1b, Pou3f3os2

Feature Type

lncRNA gene
IDs

MGI:1913870
NCBI Gene: 66620
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr1:42746221-42752614 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, Syntenic
Mapping Data

1 experiment

SNPs within 2kb

56 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913870	lncRNA gene	Chr1:42746206-42752940 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015095	unclassified non-coding RNA gene	Chr1:41657289-41663646 (-)
A/J	MGP_AJ_G0015068	unclassified non-coding RNA gene	Chr1:40421227-40427605 (-)
AKR/J	MGP_AKRJ_G0015031	unclassified non-coding RNA gene	Chr1:40932563-40938920 (-)
BALB/cJ	MGP_BALBcJ_G0015031	unclassified non-coding RNA gene	Chr1:40080093-40086483 (-)
C3H/HeJ	MGP_C3HHeJ_G0014854	unclassified non-coding RNA gene	Chr1:41312386-41318763 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015488	unclassified non-coding RNA gene	Chr1:43379905-43386270 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013235	unclassified non-coding RNA gene	Chr1:37247934-37254380 (-)
CAST/EiJ	MGP_CASTEiJ_G0014409	unclassified non-coding RNA gene	Chr1:41292552-41300376 (-)
CBA/J	MGP_CBAJ_G0014833	unclassified non-coding RNA gene	Chr1:44657408-44663796 (-)
DBA/2J	MGP_DBA2J_G0014926	unclassified non-coding RNA gene	Chr1:39687670-39694047 (-)
FVB/NJ	MGP_FVBNJ_G0014938	unclassified non-coding RNA gene	Chr1:39217854-39224224 (-)
LP/J	MGP_LPJ_G0015009	unclassified non-coding RNA gene	Chr1:41998165-42005733 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014965	unclassified non-coding RNA gene	Chr1:46634505-46640831 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015526	unclassified non-coding RNA gene	Chr1:41139159-41145516 (-)
PWK/PhJ	MGP_PWKPhJ_G0014202	unclassified non-coding RNA gene	Chr1:39551573-39558071 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013991	unclassified non-coding RNA gene	Chr1:41136660-41143042 (-)
WSB/EiJ	MGP_WSBEiJ_G0014513	unclassified non-coding RNA gene	Chr1:41178657-41185009 (-)

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Gene Tree

Pantr2

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Phenotype Summary

7 phenotypes from 1 allele in 1 genetic background
5 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

2
Chemically induced (other)

1
Targeted

1
Genomic Mutations

1 involving Pantr2
Find Mice (IMSR)

0 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Mice homozygous for a null allele show decreased body weight, a decrease in the number of intermediate progenitor cells in the subventricular zone, decreased neocortex size, and a smaller and disorganized barrel cortex.

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All GO Annotations

6
GO References

2

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

711
Tissues

5
cDNA Data

2
Literature Summary

3

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

GEO

Expression Atlas

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All Sequences

32
RefSeq

1

Ensembl

ENSMUSG00000097063 (Evidence)
NCBI Gene

66620

Representative Sequences				Length	Strain/Species	Flank
	genomic	66620	NCBI Gene Model \| MGI Sequence Detail	6394	C57BL/6J	± kb
	transcript	NR_110495	RefSeq \| MGI Sequence Detail	463	ZRU/MplStud

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All nucleic 2

cDNA 2

Summaries

All 11

Developmental Gene Expression 3

Gene Ontology 2

Phenotypes 5
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:233815 Lai KM, et al., Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs. PLoS One. 2015;10(4):e0125522

TSS for Pantr2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11466	Chr1:42752909-42752915 (-)	-298 bp
Tssr11465	Chr1:42752846-42752858 (-)	-238 bp
Tssr11464	Chr1:42750499-42750502 (-)	2,113 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/23/2024 MGI 6.23