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1700017N19Rik Gene Detail
Summary
  • Symbol
    1700017N19Rik
  • Name
    RIKEN cDNA 1700017N19 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913855
    NCBI Gene: 66605
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:100426346-100454257 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 51.51 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    367 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913855
 protein coding gene Chr10:100426346-100454263 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017693
 protein coding gene Chr10:102459092-102488170 (+)
A/J MGP_AJ_G0017672
 protein coding gene Chr10:98740344-98768192 (+)
AKR/J MGP_AKRJ_G0017634
 protein coding gene Chr10:101561324-101589429 (+)
BALB/cJ MGP_BALBcJ_G0017636
 protein coding gene Chr10:99043022-99070841 (+)
C3H/HeJ MGP_C3HHeJ_G0017461
 protein coding gene Chr10:101589728-101617363 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018093
 protein coding gene Chr10:106039841-106067528 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015772
 protein coding gene Chr10:94118407-94148360 (+)
CAST/EiJ MGP_CASTEiJ_G0017022
 protein coding gene Chr10:101636842-101666532 (+)
CBA/J MGP_CBAJ_G0017430
 protein coding gene Chr10:110101089-110128853 (+)
DBA/2J MGP_DBA2J_G0017535
 protein coding gene Chr10:97822889-97850686 (+)
FVB/NJ MGP_FVBNJ_G0017529
 protein coding gene Chr10:97020739-97049829 (+)
LP/J MGP_LPJ_G0017609
 protein coding gene Chr10:103070790-103100464 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017559
 protein coding gene Chr10:111406329-111436972 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018131
 protein coding gene Chr10:101539948-101567678 (+)
PWK/PhJ MGP_PWKPhJ_G0016804
 protein coding gene Chr10:97895125-97923735 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016594
 protein coding gene Chr10:100311148-100340908 (+)
WSB/EiJ MGP_WSBEiJ_G0017082
 protein coding gene Chr10:101520810-101550412 (+)



Homology
more
  • Human Ortholog
    C12orf50, chromosome 12 open reading frame 50
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C12orf50, chromosome 12 open reading frame 50
  • Links
    NCBI Gene ID: 160419
    neXtProt AC: NX_Q8NA57
    UniProt: Q8NA57

  • Chr Location
    12q21.32; chr12:87980035-88034037 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66605 NCBI Gene Model | MGI Sequence Detail 27912 C57BL/6J ±  kb
transcript NM_001081246 RefSeq | MGI Sequence Detail 1690 Not Specified  
polypeptide NP_001074715 RefSeq | MGI Sequence Detail 415 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    9 Sequences
  • InterPro Domains
    IPR040943 Protein of unknown function DUF5571
    IPR041686 Zinc-finger CCCH domain
    IPR000571 Zinc finger, CCCH-type
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory