Oip5os1 Gene Detail

Summary

• Symbol
  Oip5os1
• Name
  Opa interacting protein 5, opposite strand 1
• Synonyms
  1190006L01Rik, 1700020I14Rik, 4933437I03Rik, Cyrano, linc-oip5, Oip5as1

• Feature Type
  lncRNA gene
• IDs
  MGI:1913852
  NCBI Gene: 66602
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:119424777-119431227 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 59.97 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913852	lncRNA gene	Chr2:119424396-119437983 (+)
129S1/SvImJ	ENSMUSG00200049292	lncRNA gene	Chr2:116369581-116382995 (+)
A/J	ENSMUSG00195025614	lncRNA gene	Chr2:116416637-116429939 (+)
AKR/J	ENSMUSG00220043487	lncRNA gene	Chr2:116334984-116348365 (+)
BALB/cJ	ENSMUSG00180044419	lncRNA gene	Chr2:116217006-116230301 (+)
C3H/HeJ	ENSMUSG00175027781	lncRNA gene	Chr2:116682192-116695559 (+)
C57BL/6NJ	ENSMUSG00215033819	lncRNA gene	Chr2:116342145-116355372 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005466	lincRNA gene	Chr2:112429643-112442880 (+)
CAST/EiJ	ENSTCUG00005017414	lncRNA gene	Chr2:115621202-115634564 (+)
CBA/J	ENSMUSG00210007532	lncRNA gene	Chr2:116523179-116536548 (+)
DBA/2J	ENSMUSG00185049217	lncRNA gene	Chr2:116214737-116228031 (+)
FVB/NJ	ENSMUSG00205043125	lncRNA gene	Chr2:115435751-115449136 (+)
JF1/MsJ	ENSUMUG00000042012	lncRNA gene	Chr2:116090848-116104086 (+)
LP/J	ENSMUSG00230023807	lncRNA gene	Chr2:118029258-118042667 (+)
NOD/ShiLtJ	ENSMUSG00190047160	lncRNA gene	Chr2:116451369-116464738 (+)
NZO/HlLtJ	ENSMUSG00225004782	lncRNA gene	Chr2:125929733-125943098 (+)
PWK/PhJ	ENSLUMG00010047862	lncRNA gene	Chr2:115991623-116004923 (+)
SPRET/EiJ	ENSMSPG00010045165	lncRNA gene	Chr2:118394180-118407471 (+)
WSB/EiJ	ENSIUOG00005029716	lncRNA gene	Chr2:116178672-116191951 (+)

Homology

• MGI Vertebrate Homology
  Oip5os1 stringent orthology
  1 mouse;1 zebrafish
  
• Gene Tree
  Oip5os1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 2 alleles in 2 genetic backgrounds
  9 phenotype references
  

• All Mutations and Alleles
  15
• Chemically induced (other)
  1
• Endonuclease-mediated
  9
• Gene trapped
  2
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving Oip5os1
• Find Mice (IMSR)
  7 strains or lines available

Mice homozygous for a knockout allele exhibit no overt abnormalities.

Expression

• Assay Results
  718
• Tissues
  30
• cDNA Data
  19
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  114
• RefSeq
  2

• Ensembl
  ENSMUSG00000085438 (Evidence)
• NCBI Gene
  66602

Representative Sequences			Length	Strain/Species
genomic	66602	NCBI Gene Model | MGI Sequence Detail	6451	C57BL/6J
transcript	NR_015473	RefSeq | MGI Sequence Detail	1564	C57BL/6

Molecular
Reagents

• All nucleic 23

  cDNA 20

  Primer pair 3

  
  

  Microarray probesets 7

Other
Accession IDs

MGI:1914028, MGI:1916190, MGI:2138964, MGI:2139006, MGI:2139364, MGI:2139405, MGI:6295965, MGI:6295966

References

• Summaries
  All 31

  Developmental Gene Expression 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:359685 Zhuang A, et al., Deletion of the muscle enriched lncRNA Oip5os1 induces atrial dysfunction in male mice with diabetes. Physiol Rep. 2023 Dec;11(23):e15869

TSS for Oip5os1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19642	Chr2:119424769-119424813 (+)	14 bp
Tssr19643	Chr2:119430440-119430445 (+)	5,666 bp