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Nipsnap3b Gene Detail
Summary
  • Symbol
    Nipsnap3b
  • Name
    nipsnap homolog 3B
  • Synonyms
    2700063N13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913786
    NCBI Gene: 66536
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:53011932-53022060 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 28.57 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    141 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913786
 protein coding gene Chr4:53011880-53022060 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028297
 protein coding gene Chr4:51623321-51633491 (+)
A/J MGP_AJ_G0028258
 protein coding gene Chr4:49647222-49657727 (+)
AKR/J MGP_AKRJ_G0028207
 protein coding gene Chr4:51006716-51016896 (+)
BALB/cJ MGP_BALBcJ_G0028277
 protein coding gene Chr4:49824941-49835446 (+)
C3H/HeJ MGP_C3HHeJ_G0027998
 protein coding gene Chr4:51556381-51566886 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028718
 protein coding gene Chr4:53542240-53552424 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026026
 protein coding gene Chr4:46619722-46630486 (+)
CAST/EiJ MGP_CASTEiJ_G0027436
 protein coding gene Chr4:51198792-51216733 (+)
CBA/J MGP_CBAJ_G0027963
 protein coding gene Chr4:55354491-55364996 (+)
DBA/2J MGP_DBA2J_G0028113
 protein coding gene Chr4:49621324-49631829 (+)
FVB/NJ MGP_FVBNJ_G0028080
 protein coding gene Chr4:48851635-48861801 (+)
LP/J MGP_LPJ_G0028212
 protein coding gene Chr4:51732490-51742672 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028104
 protein coding gene Chr4:58600551-58613256 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028754
 protein coding gene Chr4:51242505-51252677 (+)
PWK/PhJ MGP_PWKPhJ_G0027161
 protein coding gene Chr4:49578105-49588490 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026989
 protein coding gene Chr4:50532150-50542461 (+)
WSB/EiJ MGP_WSBEiJ_G0027514
 protein coding gene Chr4:51129157-51139650 (+)



Homology
more
  • Human Ortholog
    NIPSNAP3A, nipsnap homolog 3A
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NIPSNAP3A, nipsnap homolog 3A
  • Synonyms
    HSPC299, NIPSNAP4, TASSC
  • Links
    NCBI Gene ID: 25934
    neXtProt AC: NX_Q9UFN0
    UniProt: Q9UFN0

  • Chr Location
    9q31.1; chr9:104747683-104760120 (+)  GRCh38
  • Human Ortholog
    NIPSNAP3B, nipsnap homolog 3B
  • Synonyms
    FP944, NIPSNAP3, SNAP1
  • Links
    NCBI Gene ID: 55335
    neXtProt AC: NX_Q9BS92
    UniProt: Q9BS92

  • Chr Location
    9q31.1; chr9:104764129-104790899 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    734
  • Tissues
    22
  • cDNA Data
    51
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66536 NCBI Gene Model | MGI Sequence Detail 10129 C57BL/6J ±  kb
transcript NM_025623 RefSeq | MGI Sequence Detail 1500 C57BL/6  
polypeptide Q9CQE1 UniProt | EBI | MGI Sequence Detail 247 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 51
    cDNA 51

    Microarray probesets 3
References
more
  • Summaries
    All 32
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory