Ube2d-ps Pseudogene Detail

Summary

• Symbol
  Ube2d-ps
• Name
  ubiquitin-conjugating enzyme E2D, pseudogene
• Synonyms
  1600028I17Rik, 2210015D19Rik

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1913774
  NCBI Gene: 76508
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:5712150-5734710 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 3.87 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  799 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913774	pseudogene	Chr11:5711917-5738281 (+)
129S1/SvImJ	ENSMUSG00200034496	pseudogene	Chr11:2661848-2684707 (+)
A/J	ENSMUSG00195024253	pseudogene	Chr11:2585555-2608403 (+)
AKR/J	ENSMUSG00220008978	pseudogene	Chr11:2614859-2637710 (+)
BALB/cJ	ENSMUSG00180028400	pseudogene	Chr11:2602072-2624927 (+)
C3H/HeJ	ENSMUSG00175010472	pseudogene	Chr11:2590585-2613480 (+)
C57BL/6NJ	ENSMUSG00215032678	pseudogene	Chr11:2601160-2624055 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036947	pseudogene	Chr11:2613288-2638086 (+)
CAST/EiJ	ENSTCUG00005039666	pseudogene	Chr11:2674111-2698818 (+)
CBA/J	ENSMUSG00210018361	pseudogene	Chr11:2590188-2613079 (+)
DBA/2J	ENSMUSG00185018313	pseudogene	Chr11:2687964-2710861 (+)
FVB/NJ	ENSMUSG00205036655	pseudogene	Chr11:2574318-2597231 (+)
JF1/MsJ	ENSUMUG00000049950	pseudogene	Chr11:2837596-2862350 (+)
LP/J	ENSMUSG00230035072	pseudogene	Chr11:3754384-3777240 (+)
NOD/ShiLtJ	ENSMUSG00190041099	pseudogene	Chr11:2578120-2600973 (+)
NZO/HlLtJ	ENSMUSG00225026178	pseudogene	Chr11:5805976-5828888 (+)
PWK/PhJ	ENSLUMG00010019805	pseudogene	Chr11:2580339-2603174 (+)
SPRET/EiJ	ENSMSPG00010008583	pseudogene	Chr11:2649966-2674602 (+)
WSB/EiJ	ENSIUOG00005007621	pseudogene	Chr11:2605021-2627870 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  13
• Gene trapped
  13
• Find Mice (IMSR)
  3 strains or lines available

Expression

• cDNA Data
  8

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  149
• RefSeq
  1

• Ensembl
  ENSMUSG00000083844 (Evidence), ENSMUSG00000121496 (Evidence)
• NCBI Gene
  76508

Representative Sequences			Length	Strain/Species
genomic	76508	NCBI Gene Model | MGI Sequence Detail	22561	C57BL/6J
transcript	NR_015577	RefSeq | MGI Sequence Detail	1840	C57BL/6

Molecular
Reagents

• All nucleic 9

  Genomic 1

  cDNA 8

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:1923758, MGI:2144236

References

• Summaries
  All 20

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Ube2d-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100196	Chr11:5712121-5712182 (+)	2 bp