2810002D19Rik Gene Detail

Summary

• Symbol
  2810002D19Rik
• Name
  RIKEN cDNA 2810002D19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1913707
  NCBI Gene: 66457
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:94237052-94242027 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 51.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913707	lncRNA gene	Chr2:94236496-94253110 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015448	unclassified non-coding RNA gene	Chr2:95956016-95961545 (+)
A/J	MGP_AJ_G0015424	unclassified non-coding RNA gene	Chr2:92047293-92052823 (+)
AKR/J	MGP_AKRJ_G0015388	unclassified non-coding RNA gene	Chr2:94627657-94633188 (+)
BALB/cJ	MGP_BALBcJ_G0015387	unclassified non-coding RNA gene	Chr2:92247148-92252676 (+)
C3H/HeJ	MGP_C3HHeJ_G0015210	unclassified non-coding RNA gene	Chr2:94894787-94900318 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015841	unclassified non-coding RNA gene	Chr2:99211773-99217304 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013580	unclassified non-coding RNA gene	Chr2:88523314-88528860 (+)
CAST/EiJ	MGP_CASTEiJ_G0014762	unclassified non-coding RNA gene	Chr2:95520142-95525674 (+)
CBA/J	MGP_CBAJ_G0015191	unclassified non-coding RNA gene	Chr2:102685738-102691266 (+)
DBA/2J	MGP_DBA2J_G0015285	unclassified non-coding RNA gene	Chr2:91658639-91664167 (+)
FVB/NJ	MGP_FVBNJ_G0015292	unclassified non-coding RNA gene	Chr2:90776131-90781662 (+)
LP/J	MGP_LPJ_G0015363	unclassified non-coding RNA gene	Chr2:96147254-96152782 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015316	unclassified non-coding RNA gene	Chr2:105560665-105566193 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015881	unclassified non-coding RNA gene	Chr2:94721516-94727045 (+)
PWK/PhJ	MGP_PWKPhJ_G0014550	unclassified non-coding RNA gene	Chr2:91416312-91421853 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014338	unclassified non-coding RNA gene	Chr2:94275756-94281279 (+)
WSB/EiJ	MGP_WSBEiJ_G0014869	unclassified non-coding RNA gene	Chr2:95327539-95333071 (+)

Homology

• Gene Tree
  2810002D19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  36
• Chemically induced (other)
  1
• Gene trapped
  32
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving 2810002D19Rik
• Find Mice (IMSR)
  35 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000045464 (Evidence)
• NCBI Gene
  66457

Representative Sequences			Length	Strain/Species
genomic	66457	NCBI Gene Model | MGI Sequence Detail	4976	C57BL/6J
transcript	NR_027831	RefSeq | MGI Sequence Detail	1495	Not Specified

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 4

References

• Summaries
  All 21

  Phenotypes 10
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for 2810002D19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19003	Chr2:94237064-94237107 (+)	34 bp
Tssr19004	Chr2:94237108-94237153 (+)	79 bp