2310022A10Rik Gene Detail

Summary

• Symbol
  2310022A10Rik
• Name
  RIKEN cDNA 2310022A10 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1913617
  NCBI Gene: 66367
• Alliance
  genome feature page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr7:27252658-27281524 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 15.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  894 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913617	protein coding gene	Chr7:27252482-27281524 (+)
129S1/SvImJ	ENSMUSG00200044621	protein coding gene	Chr7:17048197-17076499 (+)
A/J	ENSMUSG00195049380	protein coding gene	Chr7:19702477-19730733 (+)
AKR/J	ENSMUSG00220052393	protein coding gene	Chr7:24755239-24783497 (-)
BALB/cJ	ENSMUSG00180053546	protein coding gene	Chr7:17767661-17795918 (+)
C3H/HeJ	ENSMUSG00175050887	protein coding gene	Chr7:18811993-18840284 (+)
C57BL/6NJ	ENSMUSG00215054324	protein coding gene	Chr7:16941890-16970191 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029418	protein coding gene	Chr7:26807294-26834900 (+)
CAST/EiJ	ENSTCUG00005052307	protein coding gene	Chr7:18748679-18776320 (+)
CBA/J	ENSMUSG00210052671	protein coding gene	Chr7:17996622-18024913 (+)
DBA/2J	ENSMUSG00185049064	protein coding gene	Chr7:21103561-21131855 (+)
FVB/NJ	ENSMUSG00205045708	protein coding gene	Chr7:17786021-17814312 (+)
JF1/MsJ	ENSUMUG00000043555	protein coding gene	Chr7:25540633-25568238 (+)
LP/J	ENSMUSG00230052679	protein coding gene	Chr7:26274171-26302462 (+)
NOD/ShiLtJ	ENSMUSG00190050750	protein coding gene	Chr7:17437853-17466143 (+)
NZO/HlLtJ	ENSMUSG00225023368	protein coding gene	Chr7:25152383-25180681 (+)
PWK/PhJ	ENSLUMG00010038878	protein coding gene	Chr7:17469317-17497749 (+)
SPRET/EiJ	ENSMSPG00010039936	protein coding gene	Chr7:16850620-16878257 (+)
WSB/EiJ	ENSIUOG00005050533	protein coding gene	Chr7:11696035-11724377 (+)

Homology

• Human Ortholog
  C19orf47, chromosome 19 open reading frame 47

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C19orf47, chromosome 19 open reading frame 47
  
• Links
  HGNC:26723

  NCBI Gene ID: 126526

  UniProt: Q8N9M1

  
  
• Chr Location
  19q13.2; chr19:40292954-40348527 (-)  GRCh38

---

• MGI Vertebrate Homology
  2310022A10Rik stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: C19orf47
• Gene Tree
  2310022A10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  82
• Endonuclease-mediated
  1
• Gene trapped
  81
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  54 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  44

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  66
• RefSeq
  11
• UniProt
  6
• CCDS
  CCDS21026.1, CCDS90190.1

• Ensembl
  ENSMUSG00000049643 (Evidence)
• NCBI Gene
  66367

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000049643	Ensembl Gene Model | MGI Sequence Detail	28867	C57BL/6J
transcript	ENSMUST00000067386	Ensembl | MGI Sequence Detail	2701	Not Applicable
polypeptide	ENSMUSP00000066803	Ensembl | MGI Sequence Detail	413	Not Applicable

Protein
Information

• UniProt
  6 Sequences
• Protein Ontology
  PR:000059949 uncharacterized protein C19orf47
  (term hierarchy)
• InterPro Domains
  IPR040772 C19orf47, SAM domain
  IPR041477 Domain of unknown function DUF5577
  IPR013761 Sterile alpha motif/pointed domain superfamily
  IPR039161 Uncharacterized protein C19orf47-like
• GlyGen
  Q8R3Y5 2 sites, 1 O-linked glycan (1 site)

Molecular
Reagents

• All nucleic 44

  cDNA 44

  
  

  Microarray probesets 3

References

• Summaries
  All 27

  Phenotypes 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2310022A10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65296	Chr7:27252669-27252727 (+)	40 bp
Tssr65298	Chr7:27259876-27259893 (+)	7,227 bp
Tssr65299	Chr7:27259895-27259921 (+)	7,250 bp
Tssr65300	Chr7:27259923-27259941 (+)	7,274 bp
Tssr65301	Chr7:27259952-27259980 (+)	7,308 bp
Tssr65302	Chr7:27265815-27265839 (+)	13,169 bp
Tssr65303	Chr7:27273815-27273905 (+)	21,202 bp
Tssr65304	Chr7:27275154-27275173 (+)	22,506 bp
Tssr65305	Chr7:27280330-27280343 (+)	27,679 bp
Tssr65306	Chr7:27280650-27280683 (+)	28,009 bp
Tssr65307	Chr7:27280686-27280702 (+)	28,036 bp