1700029M20Rik Gene Detail

Summary

• Symbol
  1700029M20Rik
• Name
  RIKEN cDNA 1700029M20 gene
• Synonyms
  4930406E24Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1913597
  NCBI Gene: 73937
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:135353966-135357509 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 67.87 cM, cytoband D3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  224 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913597	lncRNA gene	Chr4:135345685-135357517 (+)
129S1/SvImJ	ENSMUSG00200021179	lncRNA gene	Chr4:128773152-128776695 (+)
A/J	ENSMUSG00195045452	lncRNA gene	Chr4:130125819-130129362 (+)
AKR/J	ENSMUSG00220047783	lncRNA gene	Chr4:129119572-129123115 (+)
BALB/cJ	ENSMUSG00180050459	lncRNA gene	Chr4:127758182-127761725 (+)
C3H/HeJ	ENSMUSG00175048615	lncRNA gene	Chr4:128778838-128782381 (+)
C57BL/6NJ	ENSMUSG00215052543	lncRNA gene	Chr4:130293273-130296817 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005944	lincRNA gene	Chr4:125295584-125299118 (+)
CAST/EiJ	ENSTCUG00005049063	lncRNA gene	Chr4:129698583-129702119 (+)
CBA/J	ENSMUSG00210053997	lncRNA gene	Chr4:128402810-128406353 (+)
DBA/2J	ENSMUSG00185053710	lncRNA gene	Chr4:129931533-129935076 (+)
FVB/NJ	ENSMUSG00205049060	lncRNA gene	Chr4:128175059-128178602 (+)
JF1/MsJ	ENSUMUG00000046284	lncRNA gene	Chr4:130617962-130621500 (+)
LP/J	ENSMUSG00230041775	lncRNA gene	Chr4:133711446-133714989 (+)
NOD/ShiLtJ	ENSMUSG00190049067	lncRNA gene	Chr4:128163799-128167342 (+)
NZO/HlLtJ	ENSMUSG00225026863	lncRNA gene	Chr4:139654958-139658496 (+)
PWK/PhJ	ENSLUMG00010050059	lncRNA gene	Chr4:127610255-127613798 (+)
SPRET/EiJ	ENSMSPG00010045113	lncRNA gene	Chr4:129674427-129677987 (+)
WSB/EiJ	ENSIUOG00005044828	lncRNA gene	Chr4:128066550-128070093 (+)

Homology

• Gene Tree
  1700029M20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Gene trapped
  5
• Targeted
  1
• Genomic Mutations
  3 involving 1700029M20Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  13

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  73
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000086788 (Evidence)
• NCBI Gene
  73937

Representative Sequences			Length	Strain/Species
genomic	73937	NCBI Gene Model | MGI Sequence Detail	3544	C57BL/6J
transcript	NR_015613	RefSeq | MGI Sequence Detail	2963	C57BL/6
polypeptide	Q9D5N3	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:1921187

References

• Summaries
  All 21

  Phenotypes 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 1700029M20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39623	Chr4:135354001-135354012 (+)	41 bp
Tssr39624	Chr4:135354013-135354022 (+)	52 bp
Tssr39625	Chr4:135354042-135354052 (+)	81 bp
Tssr39626	Chr4:135354073-135354117 (+)	129 bp
Tssr39627	Chr4:135354123-135354143 (+)	167 bp