1700025K04Rik Gene Detail

Summary

• Symbol
  1700025K04Rik
• Name
  RIKEN cDNA 1700025K04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1913584
  NCBI Gene: 66334
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:126207844-126210203 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  195 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913584	lncRNA gene	Chr10:126185010-126210931 (+)
129S1/SvImJ	ENSMUSG00200013769	lncRNA gene	Chr10:122556935-122560022 (+)
A/J	ENSMUSG00195017848	lncRNA gene	Chr10:123024257-123027352 (+)
AKR/J	ENSMUSG00220006289	lncRNA gene	Chr10:122627772-122630860 (+)
BALB/cJ	ENSMUSG00180011647	lncRNA gene	Chr10:123015400-123018497 (+)
C3H/HeJ	ENSMUSG00175006295	lncRNA gene	Chr10:123005432-123008521 (+)
C57BL/6NJ	ENSMUSG00215021039	lncRNA gene	Chr10:122624612-122627699 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034119	lncRNA gene	Chr10:121954128-121957223 (+)
CBA/J	ENSMUSG00210009398	lncRNA gene	Chr10:122833988-122837077 (+)
DBA/2J	ENSMUSG00185009897	lncRNA gene	Chr10:122975857-122978951 (+)
FVB/NJ	ENSMUSG00205029963	lncRNA gene	Chr10:122242448-122245535 (+)
JF1/MsJ	ENSUMUG00000047408	lncRNA gene	Chr10:124282175-124285265 (+)
LP/J	ENSMUSG00230034448	lncRNA gene	Chr10:124900995-124904084 (+)
NOD/ShiLtJ	ENSMUSG00190016094	lncRNA gene	Chr10:123067188-123070275 (+)
NZO/HlLtJ	ENSMUSG00225037900	lncRNA gene	Chr10:129104883-129107970 (+)
PWK/PhJ	ENSLUMG00010010408	lncRNA gene	Chr10:122733137-122736228 (+)
SPRET/EiJ	ENSMSPG00010036772	lncRNA gene	Chr10:124690382-124693469 (+)
WSB/EiJ	ENSIUOG00005008872	lncRNA gene	Chr10:122617417-122620502 (+)

Homology

• Gene Tree
  1700025K04Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000112482 (Evidence)
• NCBI Gene
  66334

Representative Sequences			Length	Strain/Species
genomic	66334	NCBI Gene Model | MGI Sequence Detail	2360	C57BL/6J
transcript	NR_166080	RefSeq | MGI Sequence Detail	446	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700025K04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96096	Chr10:126207839-126207867 (+)	9 bp