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Susd3 Gene Detail
Summary
  • Symbol
    Susd3
  • Name
    sushi domain containing 3
  • Synonyms
    1700017I11Rik, 2810440J20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913579
    NCBI Gene: 66329
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:49384166-49402182 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 25.16 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    60 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913579
 protein coding gene Chr13:49378993-49402182 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020532
 protein coding gene Chr13:48195453-48214701 (-)
A/J MGP_AJ_G0020486
 protein coding gene Chr13:46483544-46501357 (-)
AKR/J MGP_AKRJ_G0020463
 protein coding gene Chr13:47796778-47814725 (-)
BALB/cJ MGP_BALBcJ_G0020482
 protein coding gene Chr13:46698342-46716456 (-)
C3H/HeJ MGP_C3HHeJ_G0020281
 protein coding gene Chr13:47617726-47636897 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020915
 protein coding gene Chr13:49650912-49669980 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018500
 protein coding gene Chr13:44462380-44480524 (-)
CAST/EiJ MGP_CASTEiJ_G0019796
 protein coding gene Chr13:47624748-47642615 (-)
CBA/J MGP_CBAJ_G0020242
 protein coding gene Chr13:51697246-51717928 (-)
DBA/2J MGP_DBA2J_G0020364
 protein coding gene Chr13:46008391-46026407 (-)
FVB/NJ MGP_FVBNJ_G0020343
 protein coding gene Chr13:45526922-45544894 (-)
LP/J MGP_LPJ_G0020439
 protein coding gene Chr13:48419202-48436957 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020372
 protein coding gene Chr13:51412755-51430574 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020958
 protein coding gene Chr13:47498479-47516245 (-)
PWK/PhJ MGP_PWKPhJ_G0019552
 protein coding gene Chr13:46188782-46207214 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019380
 protein coding gene Chr13:46198795-46218143 (-)
WSB/EiJ MGP_WSBEiJ_G0019858
 protein coding gene Chr13:47808631-47826564 (-)



Homology
more
  • Human Ortholog
    SUSD3, sushi domain containing 3
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SUSD3, sushi domain containing 3
  • Links
    NCBI Gene ID: 203328
    neXtProt AC: NX_Q96L08
    UniProt: Q96L08

  • Chr Location
    9q22.31; chr9:93058688-93085138 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Targeted
    3
  • Genomic Mutations
    1 involving Susd3
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    9 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    765
  • Tissues
    55
  • cDNA Data
    27
  • Literature Summary
    4
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021384 Ensembl Gene Model | MGI Sequence Detail 18017 C57BL/6J ±  kb
transcript ENSMUST00000058196 Ensembl | MGI Sequence Detail 1418 Not Applicable  
polypeptide ENSMUSP00000061423 Ensembl | MGI Sequence Detail 269 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 29
    cDNA 28
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1919994
References
more
  • Summaries
    All 35
    Developmental Gene Expression 4
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:193641 Nakano Y, et al., A mutation in the Srrm4 gene causes alternative splicing defects and deafness in the Bronx waltzer mouse. PLoS Genet. 2012;8(10):e1002966
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
01/17/2023
MGI 6.22 		The Jackson Laboratory