1810009A15Rik Gene Detail

Summary

• Symbol
  1810009A15Rik
• Name
  RIKEN cDNA 1810009A15 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1913526
  NCBI Gene: 66276
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:8866247-8868123 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 5.93 cM, cytoband A
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913526	protein coding gene	Chr19:8866217-8868245 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024819	protein coding gene	Chr19:6173126-6176050 (+)
A/J	MGP_AJ_G0024787	protein coding gene	Chr19:5840760-5842719 (+)
AKR/J	MGP_AKRJ_G0024762	protein coding gene	Chr19:5936713-5939557 (+)
BALB/cJ	MGP_BALBcJ_G0024787	protein coding gene	Chr19:5947766-5949817 (+)
C3H/HeJ	MGP_C3HHeJ_G0024553	protein coding gene	Chr19:6022657-6024937 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0025234	protein coding gene	Chr19:6309531-6311556 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022663	protein coding gene	Chr19:6094984-6097381 (+)
CAST/EiJ	MGP_CASTEiJ_G0024026	protein coding gene	Chr19:5674869-5676868 (+)
CBA/J	MGP_CBAJ_G0024527	protein coding gene	Chr19:6419125-6423168 (+)
DBA/2J	MGP_DBA2J_G0024654	protein coding gene	Chr19:5673396-5675550 (+)
FVB/NJ	MGP_FVBNJ_G0024621	protein coding gene	Chr19:5746197-5748363 (+)
LP/J	MGP_LPJ_G0024742	protein coding gene	Chr19:6068222-6070935 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024648	protein coding gene	Chr19:6283278-6287743 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025283	protein coding gene	Chr19:5981710-5984560 (+)
PWK/PhJ	MGP_PWKPhJ_G0023771	protein coding gene	Chr19:5348150-5350174 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0023576	protein coding gene	Chr19:5590018-5592009 (+)
WSB/EiJ	MGP_WSBEiJ_G0024088	protein coding gene	Chr19:5953974-5956082 (+)

Homology

• Human Ortholog
  C11orf98, chromosome 11 open reading frame 98

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C11orf98, chromosome 11 open reading frame 98
  
• Synonyms
  C11orf48
• Links
  HGNC:51238

  NCBI Gene ID: 102288414

  neXtProt AC: NX_E9PRG8

  UniProt: E9PRG8

  
  
• Chr Location
  11q12.3; chr11:62662817-62665216 (-)  GRCh38.p7

---

• Alliance of Genome Resources
  1810009A15Rik stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: C11orf98
• Gene Tree
  1810009A15Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  17 strains or lines available

Expression

• Assay Results
  769
• Tissues
  14
• cDNA Data
  7
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 1810009A15Rik interacts with 31 markers (Mir9-1, Mir9-2, Mir9-3, ...) View All

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  3
• UniProt
  3
• CCDS
  CCDS29555.1

• Ensembl
  ENSMUSG00000071653 (Evidence)
• NCBI Gene
  66276

Representative Sequences			Length	Strain/Species
genomic	66276	NCBI Gene Model | MGI Sequence Detail	1877	C57BL/6J
transcript	NR_104416	RefSeq | MGI Sequence Detail	813	C57BL/6
polypeptide	Q9D937	UniProt | EBI | MGI Sequence Detail	123	Not Applicable

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR037691 Uncharacterized protein C11orf98

Molecular
Reagents

• All nucleic 9

  cDNA 8

  Primer pair 1

  
  

  Microarray probesets 2

References

• Summaries
  All 19

  Developmental Gene Expression 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1810009A15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154872	Chr19:8866244-8866289 (+)	20 bp