1810014B01Rik Pseudogene Detail

Summary

• Symbol
  1810014B01Rik
• Name
  RIKEN cDNA 1810014B01 gene

• Feature Type
  pseudogene
• IDs
  MGI:1913513
  NCBI Gene: 66263
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:86521753-86524493 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.04 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913513	pseudogene	Chr10:86521391-86525818 (+)
129S1/SvImJ	ENSMUSG00200030815	pseudogene	Chr10:83018120-83027405 (+)
A/J	ENSMUSG00195021854	pseudogene	Chr10:83463240-83472540 (+)
AKR/J	ENSMUSG00220023216	pseudogene	Chr10:83065518-83074815 (+)
BALB/cJ	ENSMUSG00180035421	pseudogene	Chr10:83466351-83475648 (+)
C3H/HeJ	ENSMUSG00175024120	pseudogene	Chr10:83355963-83365260 (+)
C57BL/6NJ	ENSMUSG00215032674	pseudogene	Chr10:83012780-83022063 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035642	pseudogene	Chr10:82776611-82785913 (+)
CBA/J	ENSMUSG00210037309	pseudogene	Chr10:83197368-83206665 (+)
DBA/2J	ENSMUSG00185041876	pseudogene	Chr10:83414880-83424173 (+)
FVB/NJ	ENSMUSG00205018899	pseudogene	Chr10:83073528-83083062 (+)
JF1/MsJ	ENSUMUG00000022579	pseudogene	Chr10:84770456-84779973 (+)
LP/J	ENSMUSG00230018118	pseudogene	Chr10:85300790-85310087 (+)
NOD/ShiLtJ	ENSMUSG00190020092	pseudogene	Chr10:83448812-83458109 (+)
NZO/HlLtJ	ENSMUSG00225053434	pseudogene	Chr10:89572024-89581321 (+)
PWK/PhJ	ENSLUMG00010023656	pseudogene	Chr10:83055782-83065309 (+)
SPRET/EiJ	ENSMSPG00010035139	pseudogene	Chr10:84529537-84538743 (+)
WSB/EiJ	ENSIUOG00005037229	pseudogene	Chr10:83142850-83152137 (+)

Homology

• Gene Tree
  1810014B01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1810014B01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  16

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000097412 (Evidence)
• NCBI Gene
  66263

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097412	Ensembl Gene Model | MGI Sequence Detail	2741	C57BL/6J
transcript	ENSMUST00000218536	Ensembl | MGI Sequence Detail	204	Not Applicable

Molecular
Reagents

• All nucleic 18

  cDNA 18

  
  

  Microarray probesets 3

References

• Summaries
  All 17

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460

TSS for 1810014B01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94998	Chr10:86521436-86521487 (+)	-291 bp