Rps4l MGI Mouse Pseudogene Detail - MGI:1913434

Symbol

Rps4l
Name

ribosomal protein S4-like
Synonyms

1110033J19Rik, Rps4y2

Feature Type

pseudogene

BioType Conflict
IDs

MGI:1913434
NCBI Gene: 66184
Alliance

genome feature page
Transcription Start Sites

5 TSS

Sequence Map

Chr6:148256154-148257094 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 78.49 cM
Mapping Data

3 experiments

SNPs within 2kb

29 from dbSNP Build 142
Strain Annotations

35

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913434	pseudogene	Chr6:148256098-148257431 (+)
129S1/SvImJ	ENSMUSG00200003849	pseudogene	Chr6:145781097-145782430 (+)
129S1/SvImJ	ENSMUSG00200003089	protein coding gene	Chr6:145780871-145792103 (+)
A/J	ENSMUSG00195003801	protein coding gene	Chr6:144687457-144698689 (+)
A/J	ENSMUSG00195003896	pseudogene	Chr6:144687683-144689016 (+)
AKR/J	ENSMUSG00220012361	protein coding gene	Chr6:142954660-142965892 (+)
AKR/J	ENSMUSG00220012690	pseudogene	Chr6:142954886-142956219 (+)
BALB/cJ	ENSMUSG00180002467	protein coding gene	Chr6:144814549-144825783 (+)
BALB/cJ	ENSMUSG00180002523	pseudogene	Chr6:144814775-144816108 (+)
C3H/HeJ	ENSMUSG00175002494	pseudogene	Chr6:144738019-144739352 (+)
C3H/HeJ	ENSMUSG00175002469	protein coding gene	Chr6:144737793-144749023 (+)
C57BL/6NJ	ENSMUSG00215003575	protein coding gene	Chr6:144912551-144923824 (+)
C57BL/6NJ	ENSMUSG00215003824	pseudogene	Chr6:144912777-144914110 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010634	protein coding gene	Chr6:145541326-145552573 (+)
CAST/EiJ	ENSTCUG00005011019	pseudogene	Chr6:145541552-145542885 (+)
CBA/J	ENSMUSG00210004521	protein coding gene	Chr6:144823529-144834761 (+)
CBA/J	ENSMUSG00210005456	pseudogene	Chr6:144823755-144825088 (+)
DBA/2J	ENSMUSG00185016088	pseudogene	Chr6:145445216-145446549 (+)
DBA/2J	ENSMUSG00185015545	protein coding gene	Chr6:145444990-145456218 (+)
FVB/NJ	ENSMUSG00205000091	pseudogene	Chr6:143805815-143807148 (+)
FVB/NJ	ENSMUSG00205000044	protein coding gene	Chr6:143805589-143816830 (+)
JF1/MsJ	ENSUMUG00000012791	protein coding gene	Chr6:144090928-144098288 (+)
JF1/MsJ	ENSUMUG00000014421	pseudogene	Chr6:144091154-144092487 (+)
LP/J	ENSMUSG00230005716	pseudogene	Chr6:146551618-146552951 (+)
LP/J	ENSMUSG00230005414	protein coding gene	Chr6:146551392-146562612 (+)
NOD/ShiLtJ	ENSMUSG00190001881	protein coding gene	Chr6:145299014-145310245 (+)
NOD/ShiLtJ	ENSMUSG00190002317	pseudogene	Chr6:145299240-145300573 (+)
NZO/HlLtJ	ENSMUSG00225012626	protein coding gene	Chr6:149457325-149468563 (+)
NZO/HlLtJ	ENSMUSG00225013868	pseudogene	Chr6:149457551-149458884 (+)
PWK/PhJ	ENSLUMG00010002295	protein coding gene	Chr6:143170048-143177388 (+)
PWK/PhJ	ENSLUMG00010002438	pseudogene	Chr6:143170274-143171607 (+)
SPRET/EiJ	ENSMSPG00010016173	protein coding gene	Chr6:147142493-147149685 (+)
SPRET/EiJ	ENSMSPG00010016818	pseudogene	Chr6:147142719-147144064 (+)
WSB/EiJ	ENSIUOG00005004547	protein coding gene	Chr6:145497857-145509082 (+)
WSB/EiJ	ENSIUOG00005004928	pseudogene	Chr6:145498083-145499416 (+)

less

Protein SuperFamily

Ribosomal_S4
Gene Tree

Rps4l

less

Phenotype Summary

1 phenotype reference

All Mutations and Alleles

1
Endonuclease-mediated

1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

8 strains or lines available

less

All GO Annotations

9
GO References

4

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

601
Tissues

4
cDNA Data

73
Literature Summary

3

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

less

All Sequences

50
RefSeq

1
UniProt

2

Ensembl

ENSMUSG00000063171 (Evidence)
NCBI Gene

66184

			Length	Strain/Species	Flank
genomic	66184	NCBI Gene Model \| MGI Sequence Detail	941	C57BL/6J	± kb
transcript	NR_003634	RefSeq \| MGI Sequence Detail	941	C57BL/6
polypeptide	Q3V1Z5	UniProt \| EBI \| MGI Sequence Detail	262	Not Applicable

less

UniProt

2 Sequences
InterPro Domains

IPR005824 KOW

IPR014722 Large ribosomal subunit protein uL2, domain 2

IPR002942 RNA-binding S4 domain

IPR036986 RNA-binding S4 domain superfamily

IPR000876 Small ribosomal subunit protein eS4

IPR038237 Small ribosomal subunit protein eS4, central domain superfamily

IPR013845 Small ribosomal subunit protein eS4, central region

IPR032277 Small ribosomal subunit protein eS4, C-terminal domain

IPR041982 Small ribosomal subunit protein eS4, KOW domain

IPR013843 Small ribosomal subunit protein eS4, N-terminal

IPR018199 Small ribosomal subunit protein eS4, N-terminal, conserved site

less

All nucleic 73

cDNA 73

Microarray probesets 4

less

MGI:1889335

Summaries

All 28

Developmental Gene Expression 3

Gene Ontology 4

Phenotypes 1
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034

TSS for Rps4l:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59631	Chr6:148256146-148256160 (+)	-1 bp
Tssr59632	Chr6:148256181-148256192 (+)	33 bp
Tssr59633	Chr6:148256275-148256300 (+)	134 bp
Tssr59634	Chr6:148256355-148256365 (+)	206 bp
Tssr59635	Chr6:148256605-148256626 (+)	462 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24