Ccl19-ps1 Pseudogene Detail

Summary

• Symbol
  Ccl19-ps1
• Name
  C-C motif chemokine ligand 19, pseudogene 1
• Synonyms
  ELC, Scya19-ps1

• Feature Type
  pseudogene
• IDs
  MGI:1891387
  NCBI Gene: 100861618
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:41921405-41923020 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 22.13 cM
• Mapping Data
  2 experiments

Strain
Comparison

• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1891387	pseudogene	Chr4:41921279-41923225 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220038675	pseudogene	Chr4:38840965-38842580 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004763	pseudogene	Chr4:38609427-38611042 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185006664	pseudogene	Chr4:38889267-38890882 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000030286	pseudogene	Chr4:39064466-39066081 (+)
LP/J	ENSMUSG00230042669	pseudogene	Chr4:42266224-42267839 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225007315	pseudogene	Chr4:46149645-46151260 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005050275	pseudogene	Chr4:38543696-38545310 (+)

Homology

• Gene Tree
  Ccl19-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Ccl19-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000082902 (Evidence)
• NCBI Gene
  100861618

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082902	Ensembl Gene Model | MGI Sequence Detail	1616	C57BL/6J
transcript	ENSMUST00000119621	Ensembl | MGI Sequence Detail	327	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 3

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:66381 Nakano H, et al., Gene duplications at the chemokine locus on mouse chromosome 4: multiple strain-specific haplotypes and the deletion of secondary lymphoid-organ chemokine and EBI-1 ligand chemokine genes in the plt mutation. J Immunol. 2001 Jan 1;166(1):361-9
• Latest
  J:76755 IUIS/WHO Subcommittee on Chemokine Nomenclature, Chemokine/chemokine receptor nomenclature. J Immunol Methods. 2002 Apr 1;262(1-2):1-3