Zfp862-ps Pseudogene Detail

Summary

• Symbol
  Zfp862-ps
• Name
  zinc finger protein 862, pseudogene
• Synonyms
  4732460K03Rik, mKIAA0543, Zfp862

• Feature Type
  pseudogene
• IDs
  MGI:1889827
  NCBI Gene: 58894
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:48481308-48509057 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 23.48 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  942 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1889827	pseudogene	Chr6:48481273-48511766 (+)
129S1/SvImJ	ENSMUSG00200005894	pseudogene	Chr6:45386888-45417380 (+)
A/J	ENSMUSG00195007129	pseudogene	Chr6:45162120-45188186 (+)
AKR/J	ENSMUSG00220004598	pseudogene	Chr6:44871462-44897523 (+)
BALB/cJ	ENSMUSG00180023532	pseudogene	Chr6:45474872-45500939 (+)
C3H/HeJ	ENSMUSG00175018476	pseudogene	Chr6:45236524-45262587 (+)
C57BL/6NJ	ENSMUSG00215011097	pseudogene	Chr6:45431917-45462426 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028337	pseudogene	Chr6:42930588-42956020 (+)
CAST/EiJ	ENSTCUG00005005168	pseudogene	Chr6:44753610-44778958 (+)
CBA/J	ENSMUSG00210018606	pseudogene	Chr6:45281362-45307426 (+)
DBA/2J	ENSMUSG00185014296	pseudogene	Chr6:45863052-45889115 (+)
FVB/NJ	ENSMUSG00205035326	pseudogene	Chr6:45527506-45553570 (+)
JF1/MsJ	ENSUMUG00000013717	pseudogene	Chr6:45224666-45252206 (+)
LP/J	ENSMUSG00230019902	pseudogene	Chr6:46884013-46914507 (+)
NOD/ShiLtJ	ENSMUSG00190035099	pseudogene	Chr6:45201358-45227421 (+)
NZO/HlLtJ	ENSMUSG00225019474	pseudogene	Chr6:48920542-48951033 (+)
PWK/PhJ	ENSLUMG00010022775	pseudogene	Chr6:44858929-44886648 (+)
SPRET/EiJ	ENSMSPG00010010775	pseudogene	Chr6:45484120-45511662 (+)
WSB/EiJ	ENSIUOG00005028564	pseudogene	Chr6:45495485-45525377 (+)

Homology

• Gene Tree
  Zfp862-ps
  

Expression

• Assay Results
  665
• Tissues
  47
• cDNA Data
  10
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2

• Ensembl
  ENSMUSG00000107476 (Evidence)
• NCBI Gene
  58894

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107476	Ensembl Gene Model | MGI Sequence Detail	27750	C57BL/6J
transcript	ENSMUST00000203457	Ensembl | MGI Sequence Detail	3551	Not Applicable

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

References

• Summaries
  All 19

  Developmental Gene Expression 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for Zfp862-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56130	Chr6:48481264-48481340 (+)	-6 bp
Tssr56131	Chr6:48485268-48485288 (+)	3,970 bp