Bhmt-ps1 Pseudogene Detail

Summary

• Symbol
  Bhmt-ps1
• Name
  betaine-homocysteine methyltransferase, pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:1888909
  NCBI Gene: 57421
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:26368984-26370207 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 10.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1888909	pseudogene	Chr4:26368404-26370275 (-)
129S1/SvImJ	ENSMUSG00200012593	pseudogene	Chr4:23037710-23038904 (-)
A/J	ENSMUSG00195000300	pseudogene	Chr4:23561360-23562554 (-)
AKR/J	ENSMUSG00220014622	pseudogene	Chr4:23335069-23336263 (-)
BALB/cJ	ENSMUSG00180000222	pseudogene	Chr4:23072919-23074113 (-)
C3H/HeJ	ENSMUSG00175002370	pseudogene	Chr4:23536804-23538027 (-)
C57BL/6NJ	ENSMUSG00215000897	pseudogene	Chr4:23154529-23155752 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011435	pseudogene	Chr13:21433752-21434966 (+)
CAST/EiJ	ENSTCUG00005000428	pseudogene	Chr4:22982835-22984041 (-)
CBA/J	ENSMUSG00210004790	pseudogene	Chr4:23261198-23262421 (-)
DBA/2J	ENSMUSG00185000347	pseudogene	Chr4:23352780-23354003 (-)
FVB/NJ	ENSMUSG00205000443	pseudogene	Chr4:22900975-22902169 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230000702	pseudogene	Chr4:26627738-26628932 (-)
NOD/ShiLtJ	ENSMUSG00190000502	pseudogene	Chr4:23260608-23261802 (-)
NZO/HlLtJ	ENSMUSG00225009090	pseudogene	Chr4:30544853-30546047 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005005402	pseudogene	Chr4:23035852-23037046 (-)

Homology

• Gene Tree
  Bhmt-ps1
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000096105 (Evidence)
• NCBI Gene
  57421

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096105	Ensembl Gene Model | MGI Sequence Detail	1224	C57BL/6J
transcript	ENSMUST00000178743	Ensembl | MGI Sequence Detail	1224	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:62863 Neece DJ, et al., Isolation and characterization of a mouse betaine-homocysteine S-methyltransferase gene and pseudogene. Gene. 2000 May 30;250(1-2):31-40