Tcea1-ps1 Pseudogene Detail

Summary

• Symbol
  Tcea1-ps1
• Name
  transcription elongation factor A (SII) 1, pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:1861432
  NCBI Gene: 56645
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:90766818-90767721 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 45.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  26
• PCR
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1861432	pseudogene	Chr15:90766718-90768119 (+)
129S1/SvImJ	ENSMUSG00200035870	pseudogene	Chr15:87944612-87945515 (+)
A/J	ENSMUSG00195020618	pseudogene	Chr15:87840538-87841441 (+)
AKR/J	ENSMUSG00220032484	pseudogene	Chr15:87861574-87862477 (+)
BALB/cJ	ENSMUSG00180015700	pseudogene	Chr15:87691477-87692380 (+)
C3H/HeJ	ENSMUSG00175028813	pseudogene	Chr15:88026981-88027884 (+)
C57BL/6NJ	ENSMUSG00215033183	pseudogene	Chr15:87803128-87804031 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013054	pseudogene	ChrX:154631528-154632354 (+)
CAST/EiJ	ENSTCUG00005030925	pseudogene	Chr15:87294422-87295325 (+)
CBA/J	ENSMUSG00210013222	pseudogene	Chr15:87796407-87797310 (+)
DBA/2J	ENSMUSG00185022823	pseudogene	Chr15:87810332-87811235 (+)
FVB/NJ	ENSMUSG00205038872	pseudogene	Chr15:87568812-87569715 (+)
JF1/MsJ	ENSUMUG00000051429	pseudogene	Chr18:31647463-31648366 (-)
JF1/MsJ	ENSUMUG00000055403	pseudogene	Chr11:116484550-116485453 (+)
JF1/MsJ	ENSUMUG00000013569	pseudogene	Chr13:3632223-3633126 (+)
JF1/MsJ	ENSUMUG00000044952	pseudogene	Chr15:87351994-87352897 (+)
LP/J	ENSMUSG00230008189	pseudogene	Chr13:13086838-13087741 (+)
LP/J	ENSMUSG00230046651	pseudogene	Chr15:91166985-91167888 (+)
NOD/ShiLtJ	ENSMUSG00190030712	pseudogene	Chr15:87841609-87842512 (+)
NZO/HlLtJ	ENSMUSG00225051161	pseudogene	Chr15:91483648-91484551 (+)
NZO/HlLtJ	ENSMUSG00225035143	pseudogene	Chr13:6992100-6993003 (+)
PWK/PhJ	ENSLUMG00010017848	pseudogene	Chr13:2986258-2987161 (+)
PWK/PhJ	ENSLUMG00010034011	pseudogene	Chr15:87507853-87508756 (+)
PWK/PhJ	ENSLUMG00010018379	pseudogene	Chr16:9571881-9572785 (-)
PWK/PhJ	ENSLUMG00010013847	pseudogene	Chr18:31792658-31793561 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005011287	pseudogene	Chr15:87896190-87897093 (+)

Homology

• Gene Tree
  Tcea1-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Tcea1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000067869 (Evidence)
• NCBI Gene
  56645

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000067869	Ensembl Gene Model | MGI Sequence Detail	904	C57BL/6J
transcript	ENSMUST00000117942	Ensembl | MGI Sequence Detail	904	Not Applicable

Molecular
Reagents

• All nucleic 1

  Primer pair 1

References

• Summaries
  All 28

  Diseases 1

  Phenotypes 23
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)

TSS for Tcea1-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132706	Chr15:90767250-90767259 (+)	437 bp