Prdx2-ps2 Pseudogene Detail

Summary

• Symbol
  Prdx2-ps2
• Name
  peroxiredoxin 2, pseudogene 2
• Synonyms
  Prdx2-rs3, Prx ll-3, Tdpx-ps2

• Feature Type
  pseudogene
• IDs
  MGI:1859808
  NCBI Gene: 666242
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:144518407-144519230 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1859808	pseudogene	Chr4:144518364-144519418 (+)
129S1/SvImJ	ENSMUSG00200047734	pseudogene	Chr4:137673791-137674262 (+)
A/J	ENSMUSG00195035493	pseudogene	Chr4:139277035-139277858 (+)
AKR/J	ENSMUSG00220048427	pseudogene	Chr4:137991738-137992561 (+)
BALB/cJ	ENSMUSG00180048672	pseudogene	Chr4:136957732-136958555 (+)
C3H/HeJ	ENSMUSG00175043298	pseudogene	Chr4:137944803-137945626 (+)
C57BL/6NJ	ENSMUSG00215051110	pseudogene	Chr4:139316092-139316915 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010159	pseudogene	Chr17:19834248-19834787 (+)
CAST/EiJ	ENSTCUG00005014406	pseudogene	Chr4:139088770-139089360 (+)
CBA/J	ENSMUSG00210029493	pseudogene	Chr4:137547462-137548285 (+)
DBA/2J	ENSMUSG00185052406	pseudogene	Chr4:139251335-139251925 (+)
FVB/NJ	ENSMUSG00205044654	pseudogene	Chr4:136823527-136824117 (+)
JF1/MsJ	ENSUMUG00000049738	pseudogene	Chr4:139649603-139650427 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190038044	pseudogene	Chr4:137151850-137152440 (+)
NZO/HlLtJ	ENSMUSG00225010262	pseudogene	Chr4:148796958-148797781 (+)
PWK/PhJ	ENSLUMG00010048437	pseudogene	Chr4:136654834-136655424 (+)
SPRET/EiJ	ENSMSPG00010036072	pseudogene	Chr4:138341079-138341550 (+)
WSB/EiJ	ENSIUOG00005047603	pseudogene	Chr4:136863150-136863740 (+)

Homology

• Gene Tree
  Prdx2-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Prdx2-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000083998 (Evidence)
• NCBI Gene
  666242

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083998	Ensembl Gene Model | MGI Sequence Detail	824	C57BL/6J
transcript	ENSMUST00000117259	Ensembl | MGI Sequence Detail	594	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 2

  Primer pair 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1321391, MGI:3650000, MGI:6276282

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:49541 Lim MJ, et al., The type II peroxiredoxin gene family of the mouse: molecular structure, expression and evolution. Gene. 1998 Aug 17;216(1):197-205
• Latest
  J:62456 Lyu MS, et al., Genetic mapping of six mouse peroxiredoxin genes and fourteen peroxiredoxin related sequences. Mamm Genome. 1999 Oct;10(10):1017-9