Phgr1 Gene Detail

Summary

• Symbol
  Phgr1
• Name
  proline/histidine/glycine-rich 1
• Synonyms
  1810007E14Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1858382
  NCBI Gene: 53906
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:118603255-118608646 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 59.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  267 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1858382	protein coding gene	Chr2:118603250-118608646 (+)
129S1/SvImJ	ENSMUSG00200046299	protein coding gene	Chr2:115548480-115553715 (+)
A/J	ENSMUSG00195022727	protein coding gene	Chr2:115596714-115602021 (+)
AKR/J	ENSMUSG00220035727	protein coding gene	Chr2:115474979-115480286 (+)
BALB/cJ	ENSMUSG00180040313	protein coding gene	Chr2:115401844-115407151 (+)
C3H/HeJ	ENSMUSG00175024581	protein coding gene	Chr2:115861940-115867175 (+)
C57BL/6NJ	ENSMUSG00215028168	protein coding gene	Chr2:115519969-115525364 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0024123	protein coding gene	Chr2:111589934-111595211 (+)
CAST/EiJ	ENSTCUG00005015393	protein coding gene	Chr2:114800837-114806127 (+)
CBA/J	ENSMUSG00210007003	protein coding gene	Chr2:115702908-115708143 (+)
DBA/2J	ENSMUSG00185047359	protein coding gene	Chr2:115398549-115403856 (+)
FVB/NJ	ENSMUSG00205016852	protein coding gene	Chr2:114613302-114618609 (+)
JF1/MsJ	ENSUMUG00000015716	protein coding gene	Chr2:115258478-115263873 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190033693	protein coding gene	Chr2:115631263-115636498 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010043461	protein coding gene	Chr2:115163713-115169107 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005028569	protein coding gene	Chr2:115362695-115367928 (+)

Homology

• Human Ortholog
  PHGR1, proline, histidine and glycine rich 1

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  PHGR1, proline, histidine and glycine rich 1
  
• Links
  HGNC:37226

  NCBI Gene ID: 644844

  UniProt: C9JFL3

  
  
• Chr Location
  15q15.1; chr15:40351033-40356434 (+)  GRCh38

---

• MGI Vertebrate Homology
  Phgr1 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: PHGR1
• Gene Tree
  Phgr1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Endonuclease-mediated
  3
• Radiation induced
  1
• Genomic Mutations
  2 involving Phgr1
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  68

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS16583.1, CCDS57182.1

• Ensembl
  ENSMUSG00000046804 (Evidence)
• NCBI Gene
  53906

Representative Sequences			Length	Strain/Species
genomic	53906	NCBI Gene Model | MGI Sequence Detail	5392	C57BL/6J
transcript	NM_001145644	RefSeq | MGI Sequence Detail	537	ZRU/MplStud
polypeptide	Q8K0G7	UniProt | EBI | MGI Sequence Detail	91	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000030194 proline, histidine and glycine-rich protein 1
  (term hierarchy)

Molecular
Reagents

• All nucleic 68

  cDNA 68

  
  

  Microarray probesets 2

References

• Summaries
  All 24

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Phgr1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19573	Chr2:118603247-118603261 (+)	-1 bp