Naip3-ps1 Pseudogene Detail

Summary

• Symbol
  Naip3-ps1
• Name
  NLR family, apoptosis inhibitory protein 3, pseudogene 1
• Synonyms
  Birc1c-ps1

• Feature Type
  pseudogene
• IDs
  MGI:1858253
  NCBI Gene: 53898
• Member of
  Naipc cluster
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:100401253-100415325 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 53.08 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1858253	pseudogene	Chr13:100401117-100419599 (-)
129S1/SvImJ	ENSMUSG00200009139	pseudogene	Chr13:94976651-94988585 (-)
A/J	ENSMUSG00195030984	pseudogene	Chr13:95446770-95457677 (-)
AKR/J	ENSMUSG00220030028	pseudogene	Chr13:93872714-93883497 (-)
BALB/cJ	ENSMUSG00180040127	pseudogene	Chr13:95989843-96000626 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215035878	pseudogene	Chr13:96053537-96067627 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011810	pseudogene	Chr13:95312745-95324683 (-)
CBA/J	ENSMUSG00210012000	pseudogene	Chr13:95494143-95506106 (-)
DBA/2J	ENSMUSG00185019992	pseudogene	Chr13:99155191-99165973 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000029890	pseudogene	Chr13:98873397-98885336 (-)
LP/J	ENSMUSG00230038384	pseudogene	Chr13:109161843-109172650 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225037695	pseudogene	Chr13:101669760-101680542 (-)
PWK/PhJ	ENSLUMG00010027005	pseudogene	Chr13:94890933-94903010 (-)
SPRET/EiJ	ENSMSPG00010009558	pseudogene	Chr13:96303834-96318785 (-)
WSB/EiJ	ENSIUOG00005036067	pseudogene	Chr13:94824866-94835768 (-)

Homology

• Gene Tree
  Naip3-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Naip3-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000114576 (Evidence)
• NCBI Gene
  53898

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114576	Ensembl Gene Model | MGI Sequence Detail	14073	C57BL/6J
transcript	ENSMUST00000224886	Ensembl | MGI Sequence Detail	1571	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:61136 Growney JD, et al., Evolutionary divergence of the mouse and human Lgn1/SMA repeat structures. Genomics. 2000 Feb 15;64(1):62-81
• Latest
  J:222114 Allam R, et al., Epithelial NAIPs protect against colonic tumorigenesis. J Exp Med. 2015 Mar 9;212(3):369-83