Gpr31c Pseudogene Detail

Summary

• Symbol
  Gpr31c
• Name
  G protein-coupled receptor 31, D17Leh66c region

• Feature Type
  pseudogene
• IDs
  MGI:1354371
  NCBI Gene: 667359
• Member of
  Gpr31 cluster
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:13565094-13566048 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 8.86 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1354371	pseudogene	Chr17:13565091-13566048 (-)
129S1/SvImJ	ENSMUSG00200035148	pseudogene	Chr17:9499624-9504272 (-)
129S1/SvImJ	ENSMUSG00200035353	pseudogene	Chr17:4260872-4265507 (+)
129S1/SvImJ	ENSMUSG00200035348	pseudogene	Chr17:4146470-4151114 (+)
A/J	ENSMUSG00195024021	pseudogene	Chr17:9699066-9703714 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180029068	pseudogene	Chr17:9348177-9352825 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215030897	pseudogene	Chr17:9535982-9540630 (-)
C57BL/6NJ	ENSMUSG00215033803	pseudogene	Chr17:4192991-4197625 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022214	pseudogene	Chr17:9736374-9741023 (-)
CAST/EiJ	ENSTCUG00005023264	pseudogene	Chr17:4513543-4518185 (+)
CBA/J	ENSMUSG00210042187	pseudogene	Chr17:9147204-9151853 (-)
DBA/2J	ENSMUSG00185041681	pseudogene	Chr17:10782431-10783385 (-)
DBA/2J	ENSMUSG00185041661	pseudogene	Chr17:10778834-10783479 (-)
FVB/NJ	ENSMUSG00205010411	pseudogene	Chr17:4256934-4261580 (-)
FVB/NJ	ENSMUSG00205009388	pseudogene	Chr17:9592294-9596933 (-)
JF1/MsJ	ENSUMUG00000042029	pseudogene	Chr17:4501691-4506335 (+)
JF1/MsJ	ENSUMUG00000038001	pseudogene	Chr17:10399530-10404181 (-)
LP/J	ENSMUSG00230027454	pseudogene	Chr17:12207892-12212537 (-)
LP/J	ENSMUSG00230035842	pseudogene	Chr17:6098363-6103007 (-)
NOD/ShiLtJ	ENSMUSG00190035470	pseudogene	Chr17:9678701-9683349 (-)
NZO/HlLtJ	ENSMUSG00225029270	pseudogene	Chr17:8029985-8034629 (+)
NZO/HlLtJ	ENSMUSG00225049038	pseudogene	Chr17:14130111-14134756 (-)
PWK/PhJ	ENSLUMG00010020127	pseudogene	Chr17:9666998-9671647 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005014619	pseudogene	Chr17:9573086-9577734 (-)

Homology

• Gene Tree
  Gpr31c
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000117239 (Evidence)
• NCBI Gene
  667359

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117239	Ensembl Gene Model | MGI Sequence Detail	955	C57BL/6J
transcript	ENSMUST00000233475	Ensembl | MGI Sequence Detail	955	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 2

Other
Accession IDs

MGI:3646794

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:57788 Schimenti JC, ORFless, intronless, and mutant transcription units in the mouse t complex responder (Tcr) locus. Mamm Genome. 1999 Oct;10(10):969-76

TSS for Gpr31c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146480	Chr17:13566062-13566064 (-)	-15 bp