Rps12-ps1 Pseudogene Detail

Summary

• Symbol
  Rps12-ps1
• Name
  ribosomal protein S12, pseudogene 1
• Synonyms
  Gm9153, pS12X, Rps12-ps25

• Feature Type
  pseudogene
• IDs
  MGI:1353638
  NCBI Gene: 30964
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:102533123-102533523 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 46.17 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1353638	pseudogene	ChrX:102533042-102533542 (+)
129S1/SvImJ	ENSMUSG00200039599	pseudogene	ChrX:84298236-84298636 (+)
A/J	ENSMUSG00195043365	pseudogene	ChrX:88052956-88053356 (+)
AKR/J	ENSMUSG00220040799	pseudogene	ChrX:82720594-82720994 (+)
BALB/cJ	ENSMUSG00180043484	pseudogene	ChrX:84730225-84730625 (+)
C3H/HeJ	ENSMUSG00175045912	pseudogene	ChrX:88303083-88303483 (+)
C57BL/6NJ	ENSMUSG00215046918	pseudogene	ChrX:84910156-84910556 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012814	pseudogene	ChrX:97711274-97711672 (+)
CAST/EiJ	ENSTCUG00005043944	pseudogene	ChrX:85773615-85774015 (+)
CBA/J	ENSMUSG00210046611	pseudogene	ChrX:85193902-85194302 (+)
DBA/2J	ENSMUSG00185043908	pseudogene	ChrX:97633086-97633486 (+)
FVB/NJ	ENSMUSG00205034259	pseudogene	ChrX:84275361-84275761 (+)
JF1/MsJ	ENSUMUG00000041012	pseudogene	ChrX:118240942-118241342 (+)
LP/J	ENSMUSG00230042629	pseudogene	ChrX:104331415-104331815 (+)
NOD/ShiLtJ	ENSMUSG00190043123	pseudogene	ChrX:84351709-84352109 (+)
NZO/HlLtJ	ENSMUSG00225045905	pseudogene	ChrX:109451719-109452119 (+)
PWK/PhJ	ENSLUMG00010038936	pseudogene	ChrX:83555573-83555973 (+)
SPRET/EiJ	ENSMSPG00010042951	pseudogene	ChrX:87759886-87760286 (+)
WSB/EiJ	ENSIUOG00005045666	pseudogene	ChrX:84855159-84855559 (+)

Homology

• Gene Tree
  Rps12-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from multigenic genotypes
  3 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  1
• Targeted
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000082746 (Evidence)
• NCBI Gene
  30964

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082746	Ensembl Gene Model | MGI Sequence Detail	401	C57BL/6J
transcript	ENSMUST00000121980	Ensembl | MGI Sequence Detail	401	Not Applicable

Other
Accession IDs

MGI:3646535

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:49849 Johnston CM, et al., Developmentally regulated Xist promoter switch mediates initiation of X inactivation. Cell. 1998 Sep 18;94(6):809-17
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rps12-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161725	ChrX:102533037-102533048 (+)	-80 bp