Vmn2r-ps54 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps54
• Name
  vomeronasal 2, receptor, pseudogene 54
• Synonyms
  1700108E19Rik, 4930562N12Rik, Casr-rs5, Gprc2a-rs5

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1351350
  NCBI Gene: 75835
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:41317438-41376617 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM, cytoband B2
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  1879 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1351350	pseudogene	Chr7:41316946-41376617 (+)
129S1/SvImJ	ENSMUSG00200025461	pseudogene	Chr7:29123927-29183191 (+)
A/J	ENSMUSG00195051262	pseudogene	Chr7:32972423-33031692 (+)
AKR/J	ENSMUSG00220030496	pseudogene	Chr7:19793714-19852977 (+)
BALB/cJ	ENSMUSG00180045891	pseudogene	Chr7:30320170-30379434 (+)
C3H/HeJ	ENSMUSG00175045220	pseudogene	Chr7:30561724-30620987 (+)
C57BL/6NJ	ENSMUSG00215027538	pseudogene	Chr7:29595524-29654792 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049608	pseudogene	Chr7:33155248-33220518 (+)
CBA/J	ENSMUSG00210050244	pseudogene	Chr7:30634436-30693699 (+)
DBA/2J	ENSMUSG00185051435	pseudogene	Chr7:34509603-34579677 (+)
FVB/NJ	ENSMUSG00205047598	pseudogene	Chr7:30648395-30707585 (+)
JF1/MsJ	ENSUMUG00000032507	pseudogene	Chr7:38990854-39060952 (+)
LP/J	ENSMUSG00230014644	pseudogene	Chr7:39837629-39896887 (+)
NOD/ShiLtJ	ENSMUSG00190051108	pseudogene	Chr7:30844638-30903833 (+)
NZO/HlLtJ	ENSMUSG00225010390	pseudogene	Chr7:38212002-38271248 (+)
PWK/PhJ	ENSLUMG00010024494	pseudogene	Chr7:29398910-29468914 (+)
SPRET/EiJ	ENSMSPG00010006312	pseudogene	Chr7:29387857-29454269 (+)
WSB/EiJ	ENSIUOG00005030075	pseudogene	Chr7:30355018-30414273 (+)

Expression

• cDNA Data
  5

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  1
• CCDS
  CCDS39923.1

• Ensembl
  ENSMUSG00000074164 (Evidence), ENSMUSG00000121286 (Evidence)
• NCBI Gene
  75835

Representative Sequences			Length	Strain/Species
genomic	75835	NCBI Gene Model | MGI Sequence Detail	59180	C57BL/6J
transcript	NR_004441	RefSeq | MGI Sequence Detail	2952	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1101766, MGI:1921542, MGI:1923085

References

• Summaries
  All 17
• Earliest
  J:29900 Ho C, et al., A mouse model of human familial hypocalciuric hypercalcemia and neonatal severe hyperparathyroidism [see comments]. Nat Genet. 1995 Dec;11(4):389-94
• Latest
  J:122919 Yu X, et al., Using an advanced intercross line to identify quantitative trait loci controlling immune response during collagen-induced arthritis. Genes Immun. 2007 Jun;8(4):296-301