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Ss18l2 Gene Detail
Summary
  • Symbol
    Ss18l2
  • Name
    SS18, nBAF chromatin remodeling complex subunit like 2
  • Synonyms
    1110020I04Rik, Band 47B, Deb1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1349474
    NCBI Gene: 26901
  • Alliance
    genome feature page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:121539455-121541987 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 72.56 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    149 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1349474
 protein coding gene Chr9:121539395-121542454 (+)
129S1/SvImJ ENSMUSG00200029145
 protein coding gene Chr9:118659990-118662582 (+)
A/J ENSMUSG00195027392
 protein coding gene Chr9:117823012-117825604 (+)
AKR/J ENSMUSG00220018588
 protein coding gene Chr9:118277284-118279884 (+)
BALB/cJ ENSMUSG00180026022
 protein coding gene Chr9:118360027-118362619 (+)
C3H/HeJ ENSMUSG00175018097
 protein coding gene Chr9:118603458-118606050 (+)
C57BL/6NJ ENSMUSG00215031452
 protein coding gene Chr9:118492344-118494936 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032828
 protein coding gene Chr9:117079168-117081717 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210037121
 protein coding gene Chr9:118316076-118318676 (+)
DBA/2J ENSMUSG00185014209
 protein coding gene Chr9:118650290-118652890 (+)
FVB/NJ ENSMUSG00205025202
 protein coding gene Chr9:118491754-118494346 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230033669
 protein coding gene Chr9:118799103-118801695 (+)
NOD/ShiLtJ ENSMUSG00190014717
 protein coding gene Chr9:118256312-118258904 (+)
NZO/HlLtJ ENSMUSG00225022609
 protein coding gene Chr9:119063373-119065965 (+)
PWK/PhJ ENSLUMG00010029973
 protein coding gene Chr9:118367521-118370139 (+)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005018391
 protein coding gene Chr9:117683447-117686045 (+)



Homology
more
  • Human Ortholog
    SS18L2, SS18 like 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SS18L2, SS18 like 2
  • Synonyms
    KIAA-iso
  • Links
    NCBI Gene ID: 51188
    UniProt: Q9UHA2

  • Chr Location
    3p22.1; chr3:42581840-42596934 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    698
  • Tissues
    18
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 26901 NCBI Gene Model | MGI Sequence Detail 2533 C57BL/6J ±  kb
transcript NM_026794 RefSeq | MGI Sequence Detail 541 C57BL/6  
polypeptide Q9D174 UniProt | EBI | MGI Sequence Detail 77 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 3
Other
Accession IDs
less
MGI:1915883, MGI:2143067
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Phenotypes 2
  • Earliest
    J:9590 Takahashi M, et al., Chromosomal mapping of the mouse IL-4 and human IL-5 genes. Genomics. 1989 Jan;4(1):47-52
  • Latest
    J:314576 Narayanan R, et al., Loss of BAF (mSWI/SNF) Complexes Causes Global Transcriptional and Chromatin State Changes in Forebrain Development. Cell Rep. 2015 Dec 1;13(9):1842-54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory